Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7011 105 9e-17 seq3070 87.8 3e-11 seq83789 86.0 9e-11 >seq7011 Length=120798 Score = 105 bits (116), Expect = 9e-17 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 ||||||| ||||| | || |||||||||||||||||||| || ||||| ||||| || | Sbjct 25616 TGCCAGAAGCACGCTGCTTCTACGGGTTCCAGATCGCCATGGAGAACATTCACTCCGAGA 25675 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCA-CCTCTTT 1456092 ||| || |||||| ||||||||||| ||| | | |||| | ||| | ||||| Sbjct 25676 TGTACAGTCTGCTGATCAACACCTACGTCTCCGACACCGCCGAGCA-GACGAGACTCTTC 25734 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGC 1456139 ||||||||| || |||| | | | ||| ||||| |||||||| Sbjct 25735 AACGCCATCGAGACCATGCCCTGTATTAAGAAGAAGGCAGACTGGGC 25781 Score = 104 bits (114), Expect = 3e-16 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 || ||| |||||| || ||| ||||||||| || ||||| ||||||||||| || || Sbjct 26891 CTATGCGGAGCGGATCATCGCCTTTGCCGCAGTTGAGGGAATCTTTTTCTCCGGGTCCTT 26950 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 | | ||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||| Sbjct 26951 CGCCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGG-CCTGACCTTCAGCAACG 27009 Query 1456291 AATTTATCAGTCGCGACGA 1456309 | ||||| || ||||| Sbjct 27010 AGCTTATCTCCCGGGACGA 27028 >seq3070 Length=111036 Score = 87.8 bits (96), Expect = 3e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 262915 CATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATC 262974 ||||| |||||||| |||| |||||| |||||| || ||| | || | |||||| Sbjct 50458 CATGGTGTGCGCAACAGCCTGCTGCTGGCGCCCATGCCTACCGCCTCCACCGCACAGATC 50517 Query 262975 CTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTC 263034 |||||||||| |||| |||||| | ||| |||||||||||||| || || || ||| Sbjct 50518 CTGGGCAACAACGAGAGCATCGAGGCCTACACCAGCAACATCTACACACGTCGGGTCCTC 50577 Query 263035 TCGGGCGACTT 263045 ||||| || Sbjct 50578 AGCGGCGAATT 50588 >seq83789 Length=2236 Score = 86.0 bits (94), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||| |||||||| ||||| || ||||| || ||| ||| | |||| || Sbjct 755 ATCTATAAGGTGCTGAAGCAAGTCCACCCTGATAC---TGGAGTATCA---AGCAAGGCC 702 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| || || ||||||||||| |||| | || | ||| || || Sbjct 701 ATGTCCATCATGAATTCTTTCGTCAACGACATTTTCGAGAGAATTGCCACTGAAGCTTCA 642 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | |||| | | ||||||| | | |||||| | || ||||| ||||| || || Sbjct 641 AGATTGGCCCAGTACAACAAGAGAACAACGATCACTTCTCGGGAGATACAGACTGCTGTA 582 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| || |||||||| | ||||||||| || || || |||| Sbjct 581 AGGCTTTTGCTGCCTGGTGAACTGGCGAAGCACGCCGTTTCTGAAGGAACCA 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7083607172084590