Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8970 98.7 8e-16 >seq8970 Length=179746 Score = 98.7 bits (108), Expect = 8e-16 Identities = 231/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||| || ||||| || ||||| | | || || || ||| | || || | || Sbjct 148181 CCAAAAATCGTCAATGGCCCAGAAATTCTGGACAAGTACGTGGGTGAGTCAGAGGCCAAC 148122 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||||| ||||||| || || ||||| ||| | || || | || | ||| | Sbjct 148121 ATCCGACGGCTGTTTGCCGAGGCGGAAGAGGAAGAGAAGCGCATGGGTCCCAACTCTGGC 148062 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-T 19605 | || || || ||| | |||||| | ||||| || ||||| || |||| || ||| | Sbjct 148061 CTCCATATCATTATATTTGATGAAATTGACGCTATATGTAAACAGCGAGGCTCAGTGGCT 148002 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || || || | ||||| || || ||||| ||||| || || | || || || Sbjct 148001 GGCAACACGGGCGTCAACGACACGGTCGTAAATCAGCTCCTCTCCAAGATCGATGGCGTG 147942 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||||| || | || |||||||||||||| ||| || | |||||| | Sbjct 147941 GAGCAGTTGAATAACATCCTCGTGATTGGCATGACTAACAGAAAAGACATGATAGACGAC 147882 Query 19723 GC-CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATT 19764 || || ||| |||||||| | ||||||| | | |||||| Sbjct 147881 GCTCTCATT-CGACCCGGCAGACTGGAAATTCAAGTGGAAATT 147840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392724894303475