Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq64647 113 6e-20 seq32741 102 1e-16 seq3070 89.7 6e-13 seq7011 84.2 3e-11 >seq64647 Length=8232 Score = 113 bits (124), Expect = 6e-20 Identities = 236/352 (67%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 || || || || ||||||| ||||| || ||||||||||| | |||| |||| | Sbjct 8184 CCAGTGCCAATGCCCTCGGCGCCATTGACAAGAACCATTGGGATGACAGGCACGTAATAC 8125 Query 181686 TCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 181745 || || || || | || |||| ||| |||||||| | |||| ||| ||||| Sbjct 8124 TCGGGCTCGATTTTTTGATTGTCTTCGTTCAAATAGTTGAGAAGAGGGTTATCTTGAGGA 8065 Query 181746 TCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAGCG 181805 | || || | | |||| | || || ||||| || || | | | || | Sbjct 8064 TGGAAAATGTGGTGAGCGAGAGGAGACAGCTTGGTGAAAATGTAACGAGAACTCGCAGAG 8005 Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || ||||||||||||||||| || |||||| |||| |||| ||| |||||| Sbjct 8004 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 7945 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCG 181925 || || || ||| | ||||| || || || || | ||||||||||||||| Sbjct 7944 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTGGACATGAGGGACACTTCACCG 7885 Query 181926 TGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 ||||| || || | | || |||| |||||| ||| ||||| |||| Sbjct 7884 TGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCA 7833 >seq32741 Length=53758 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || |||||| || ||||||||||||||||| || |||||| |||| |||| ||| || Sbjct 39095 AGAGTCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGAT 39154 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTC 181921 |||||| || || ||| | ||||| || || || ||| | |||||||||||| Sbjct 39155 GTTGTTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTAGACATAAGGGACACTTC 39214 Query 181922 ACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 ||||||||| || || | | || |||| |||||| ||| ||||| |||| Sbjct 39215 ACCGTGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCA 39270 >seq3070 Length=111036 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | ||||||||| || | |||||| | || || || || | ||||| ||| || Sbjct 47647 GTACTCAACAATTTCTGTGCAGAGGTTGGAGCATTTGATAGTGCCTAGATTCTGTTGATT 47588 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 ||||| ||| ||||| |||||||| ||||||||||| || || |||||| Sbjct 47587 GCTCTTGCGGTTACACGCGTCCTTGTACAGCATGTAGGGGGTTCCTGTCTCC 47536 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | ||||||||| || | |||||| | || || || || | ||||| ||| || Sbjct 89569 GTACTCAACAATTTCTGTGCAGAGGTTGGAGCATTTGATAGTGCCTAGATTCTGTTGATT 89510 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 ||||| ||| ||||| |||||||| ||||||||||| || || |||||| Sbjct 89509 GCTCTTGCGGTTACACGCGTCCTTGTACAGCATGTAGGGGGTTCCTGTCTCC 89458 >seq7011 Length=120798 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||| ||||| || ||||| ||||| || || |||| || || Sbjct 27050 GGCAAAGTCGGTGTGGAGCCCCTCGTCCCGGGAGATAAGCTCGTTGCTGAAGGTCAGGCC 26991 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| || || |||||||||| ||| | || | | ||| ||||||||||| ||||| Sbjct 26990 GGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAGGACCCGGAGAAAAAGAT 26931 Query 122778 ACCCTCCAC 122786 ||||| || Sbjct 26930 TCCCTCAAC 26922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620364553572000