Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq941051 96.9 4e-15 seq66313 96.9 4e-15 seq64647 87.8 2e-12 seq32741 87.8 2e-12 >seq941051 Length=452 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 179965 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 180024 |||||||| || ||||| | ||||||||||| ||| ||||| || ||||| |||||| Sbjct 31 AGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACTGCCAGGGTC 90 Query 180025 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCC 180084 || || || || ||||| |||| |||||||||||||| ||| || || || Sbjct 91 TTGGCTGAGTCTCCCTCTGTCAAGATGAGCGTACACTCAGAAGAGAAGCGTGTGCCAGCA 150 Query 180085 TTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGA 180125 | ||| ||||| || | ||| ||||| || | | |||||| Sbjct 151 TCGTTGGCGTCCTCGAGCTTTGGAATGCCCTTCAGTTTGGA 191 >seq66313 Length=14204 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 179965 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 180024 |||||||| || ||||| | ||||||||||| ||| ||||| || ||||| |||||| Sbjct 13768 AGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACTGCCAGGGTC 13827 Query 180025 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCC 180084 || || || || ||||| |||| |||||||||||||| ||| || || || Sbjct 13828 TTGGCTGAGTCTCCCTCAGTCAAGATGAGCGTACACTCAGAAGAGAAGCGTGTGCCAGCA 13887 Query 180085 TTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGA 180125 | ||| ||||| || | ||| ||||| || | | |||||| Sbjct 13888 TCGTTGGCGTCCTCGAGCTTTGGAATGCCCTTCAGTTTGGA 13928 >seq64647 Length=8232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 179065 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 179124 ||||| || |||||||||||||| || || |||||| |||| || | ||||| ||| Sbjct 8004 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 7945 Query 179125 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 179184 || || || | | ||| | ||||| |||||||| || | |||||| ||||||||| Sbjct 7944 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTGGACATGAGGGACACTTCACCG 7885 Query 179185 TGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTC 179240 || || || || | | || || | |||||| ||| ||||| |||| ||| Sbjct 7884 TGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCACCTC 7829 >seq32741 Length=53758 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 179065 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 179124 ||||| || |||||||||||||| || || |||||| |||| || | ||||| ||| Sbjct 39099 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 39158 Query 179125 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 179184 || || || | | ||| | ||||| |||||||| ||| | ||||| ||||||||| Sbjct 39159 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTAGACATAAGGGACACTTCACCG 39218 Query 179185 TGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTC 179240 || || || || | | || || | |||||| ||| ||||| |||| ||| Sbjct 39219 TGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCACCTC 39274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610884917904200