Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7011 111 2e-19 seq64647 107 2e-18 seq32741 98.7 1e-15 seq941051 89.7 6e-13 seq66313 89.7 6e-13 >seq7011 Length=120798 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 || ||| ||||| || |||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 26891 CTATGCGGAGCGGATCATCGCCTTTGCCGCAGTTGAGGGAATCTTTTTCTCCGGGTCCTT 26950 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | | || | ||||| |||||||| || || ||||| || || |||| |||||| Sbjct 26951 CGCCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGA 27010 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| || |||||||| |||||| || ||||| Sbjct 27011 GCTTATCTCCCGGGACGAGGGGCTCCACACCGACTTTGC 27049 >seq64647 Length=8232 Score = 107 bits (118), Expect = 2e-18 Identities = 132/180 (73%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 || || || ||||||||||||||||| ||||||||| |||| |||| ||||| ||| Sbjct 8004 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 7945 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || || || | | ||| | |||| |||||||| ||| | ||| || ||||||||| Sbjct 7944 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTGGACATGAGGGACACTTCACCG 7885 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATG----CCGCCAACTGCGCCACTTTCATCTC 168633 ||||| || || | | ||||| |||| |||||| ||| |||||||||| ||| Sbjct 7884 TGGTGATAGGCGGTGTGTTCTGC----AATGCTGCCCGCCAGCTGAGCCACTTTCACCTC 7829 >seq32741 Length=53758 Score = 98.7 bits (108), Expect = 1e-15 Identities = 130/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 || || || ||||||||||||||||| ||||||||| |||| |||| ||||| ||| Sbjct 39099 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 39158 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || || || | | ||| | |||| |||||||| || | || || ||||||||| Sbjct 39159 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTAGACATAAGGGACACTTCACCG 39218 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATG----CCGCCAACTGCGCCACTTTCATCTC 168633 ||||| || || | | ||||| |||| |||||| ||| |||||||||| ||| Sbjct 39219 TGGTGATAGGCGGTGTGTTCTGC----AATGCTGCCCGCCAGCTGAGCCACTTTCACCTC 39274 >seq941051 Length=452 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || || | |||||||||||| ||||| | ||||||||||| || ||||| || ||| Sbjct 22 TTACCTCTAAGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACT 81 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || || ||||| || ||||| ||||| || | |||||||||||| Sbjct 82 GCCAGGGTCTTGGCTGAGTCTCCCTCTGTCAAGATGAGCGTACA 125 >seq66313 Length=14204 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 169349 TTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT 169408 || || | |||||||||||| ||||| | ||||||||||| || ||||| || ||| Sbjct 13759 TTACCTCTAAGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACT 13818 Query 169409 GCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || || ||||| || ||||| ||||| || | |||||||||||| Sbjct 13819 GCCAGGGTCTTGGCTGAGTCTCCCTCAGTCAAGATGAGCGTACA 13862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576139951161800