Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7011 105 7e-18 seq3070 84.2 2e-11 >seq7011 Length=120798 Score = 105 bits (116), Expect = 7e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCT 60045 |||| || ||||| || || |||||||| ||||| || || ||| | || |||| Sbjct 26905 TCATCGCCTTTGCCGCAGTTGAGGGAATCTTTTTCTCCGGGTCCTTCGCCTCCATCTTCT 26964 Query 60046 GGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGG 60105 |||| || ||||| ||||| ||||| ||||||| ||| ||||||||| || ||||||| Sbjct 26965 GGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTTATCTCCCGGG 27024 Query 60106 ACGAGGGCCTCCA 60118 ||||||| ||||| Sbjct 27025 ACGAGGGGCTCCA 27037 >seq3070 Length=111036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 20385 TGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTT 20444 |||| | ||||||||||| |||||||| ||||| |||||| |||| ||||||||| Sbjct 50477 TGCTGCTGGCGCCCATGCCTACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGAGCA 50536 Query 20445 TCGAGCCGTACACGACCAACATCTACTTGCGTCG 20478 ||||| | ||||| | |||||||||| ||||| Sbjct 50537 TCGAGGCCTACACCAGCAACATCTACACACGTCG 50570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541828032130800