Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq64647 150 2e-31 seq32741 114 1e-20 seq3070 87.8 2e-12 >seq64647 Length=8232 Score = 150 bits (166), Expect = 2e-31 Identities = 247/354 (70%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| || || ||||| || ||||| | |||| ||| || | |||||| ||||| || Sbjct 8184 CCAGTGCCAATGCCCTCGGCGCCATTGACAAGAACCATTGGGATGACAGGCACGTAATAC 8125 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | | || ||| || | | || ||||| | | || || ||| Sbjct 8124 TCGGGCTCGATTTTTTGATTGTCTTCGTTCAAATAGTTGAGAAGAGGGTTATCTTGAGGA 8065 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| |||| | | || | || ||||||||||||||||| || |||| Sbjct 8064 TGGAAAATGTGGTGAGCGAGAGGAGACAGCTTGGTGAAAATGTAACGAGAACTCGCAGAG 8005 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || || || || |||||||||||||| || ||| | |||| || | ||| | |||| Sbjct 8004 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 7945 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT--ACCTTGGAGGCTCGCCTCAC 117449 |||| ||| || ||||| || |||| ||||||||| || || | |||| | | |||| Sbjct 7944 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTGGACAT--GAGGGACACTTCAC 7887 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCA 117503 | |||||||| || || || || || | | |||||||||||||||||| |||| Sbjct 7886 CGTGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCA 7833 Score = 134 bits (148), Expect = 1e-26 Identities = 241/352 (68%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || |||||||| || || ||||| |||| ||| || | | ||| ||||| || Sbjct 8184 CCAGTGCCAATGCCCTCGGCGCCATTGACAAGAACCATTGGGATGACAGGCACGTAATAC 8125 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | |||| ||| || ||| || || | || | || || ||| Sbjct 8124 TCGGGCTCGATTTTTTGATTGTCTTCGTTCAAATAGTTGAGAAGAGGGTTATCTTGAGGA 8065 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| || | ||| | |||| || ||||| ||||| || || || || | Sbjct 8064 TGGAAAATGTGGTGAGCGAGAGGAGACAGCTTGGTGAAAATGTAACGAGAACTCGCAGAG 8005 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || || || || || ||||| || ||||| ||| ||||| || | ||||| |||| Sbjct 8004 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 7945 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 |||| ||| ||||| ||||| |||| || ||||| ||| | || | |||||||| Sbjct 7944 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTGGACATGAGGGACACTTCACCG 7885 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCA 152227 |||||||| || || || || || ||| ||||||| ||| ||||| |||| Sbjct 7884 TGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCA 7833 >seq32741 Length=53758 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 117321 AGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGA 117380 |||| |||| || || || || |||||||||||||| || ||| | |||| || | Sbjct 39088 AGCTCGCAGAGTCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAA 39147 Query 117381 GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGC 117440 ||| | |||||||| ||| || ||||| || |||| ||||||||| ||| ||| Sbjct 39148 CGTTGATGTTGTTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTAGACATAAGGG 39207 Query 117441 TCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCT 117500 | | ||||| |||||||| || || || || || | | |||||||||||||||||| | Sbjct 39208 ACACTTCACCGTGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTT 39267 Query 117501 TCA 117503 ||| Sbjct 39268 TCA 39270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 152071 AGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAA 152130 || ||||| || ||||| ||| ||||| || | ||||| |||||||| ||| ||||| Sbjct 39114 AGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTGTTGGAGCCAACGAAG 39173 Query 152131 TTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTC 152190 ||||| |||| || ||||| || | || | |||||||||||||||| || || Sbjct 39174 TTCTGGGCCAGGTTGACAATAGTAGACATAAGGGACACTTCACCGTGGTGATAGGCGGTG 39233 Query 152191 TGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCA 152227 || || || ||| ||||||| ||| ||||| |||| Sbjct 39234 TGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCA 39270 >seq3070 Length=111036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| |||||| ||||||| ||||| ||||| || || || |||||| |||||||| Sbjct 50467 CGCAACAGCCTGCTGCTGGCGCCCATGCCTACCGCCTCCACCGCACAGATCCTGGGCAAC 50526 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| ||||| | ||||| | |||||||||| Sbjct 50527 AACGAGAGCATCGAGGCCTACACCAGCAACATCTAC 50562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540535210861000