Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6977 179 4e-40 seq64647 129 7e-25 seq7011 104 3e-17 seq4196 104 3e-17 seq32741 100 3e-16 >seq6977 Length=186913 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || ||||||||||||||||| || || || ||| | Sbjct 61427 ATGCAAATTTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTGGAAGTAGAGGCTTCG 61486 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||| || || ||||||||||| ||||| ||||| |||||| Sbjct 61487 GACACCATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAG 61546 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || |||||| | || || | ||| || || | || || ||| Sbjct 61547 CAGCGTCTTATTTTTGCCGGCAAGCAATTGGAAGACGGTCGCACTCTGTCTGATTACAAT 61606 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| || ||||| ||| | | ||||| || || Sbjct 61607 ATTCAGAAGGAATCCACCCTCCATCTTGTCCTCAGGCTTCGTGGAGG 61653 Score = 176 bits (194), Expect = 5e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || |||||||| || || || |||||||| ||| | Sbjct 62996 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACAATCACCCTTGAGGTCGAGGCCTCG 63055 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| || || ||||| ||||| || ||||| || |||||| Sbjct 63056 GATACTATTGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAG 63115 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || || || || || |||| || ||||| | ||||| ||| Sbjct 63116 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAT 63175 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||||| ||| | || |||| || |||||||| || Sbjct 63176 ATCCAGAAGGAGTCCACTCTCCATTTGGTTCTGCGACTCCGCGGTGGCCA 63225 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || ||||| || ||| | | Sbjct 60971 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAAGTCGAGGCCTCT 61030 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| |||||||||| || ||||| ||||| || ||||| || ||||| Sbjct 61031 GATACTATTGAAAATGTGAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAA 61090 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| || || |||| || || || | ||||| ||| Sbjct 61091 CAGCGTCTTATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCGGACTACAAT 61150 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| |||||||| || | | || || ||||| Sbjct 61151 ATCCAGAAAGAATCCACCCTTCATCTCGTGCTCAGACTGCGTGGTGG 61197 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || ||||| ||||| || || | || || || | Sbjct 61199 ATGCAGATTTTTGTTAAAACTCTAACCGGTAAGACAATCACCTTGGAAGTCGAAGCTTCA 61258 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | |||||||||||||| || ||||| || |||||||| |||||| Sbjct 61259 GACACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATTCCTCCTGACCAG 61318 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| || || | || || | ||||||||| | ||||| ||| Sbjct 61319 CAGCGTCTTATCTTTGCTGGCAAACAGTTGGAAGACGGTCGTACCCTGTCTGACTACAAT 61378 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||||||||||||| | || |||||||||| || || Sbjct 61379 ATTCAAAAGGAATCCACTCTTCACTTGGTGCTGCGTCTTCGAGGCGG 61425 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || |||||||| || || || || ||||| | | Sbjct 60743 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACCATCACGCTCGAAGTTGAAGCCTCT 60802 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||||||||| || ||||||||||| || ||||| || |||||| Sbjct 60803 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 60862 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| |||||||| ||||| | |||||||| | || || ||| Sbjct 60863 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGACGTACCCTCTCTGATTACAAT 60922 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || ||||| || || ||||| || Sbjct 60923 ATCCAGAAAGAATCTACCCTCCATCTTGT 60951 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || ||||||||||| ||||||||||| || || | Sbjct 62084 ATGCAGATTTTCGTGAAAACCCTGACCGGCAAGACGATTACTCTTGAAGTGGAAGCCTCG 62143 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| |||||||||||||||||||||| || || ||||| || ||||| Sbjct 62144 GATACGATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCCCCCGACCAA 62203 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || |||||||| || || || | || ||| | ||||||| || Sbjct 62204 CAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCCGCACCTTGTCAGACTACAAC 62263 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | ||||| ||||| || ||||| Sbjct 62264 ATTCAAAAAGAATCGACCCTTCA 62286 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || |||||||| || || || || || || | Sbjct 62312 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCG 62371 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | || || || |||||||||||||| || ||||| || ||||| Sbjct 62372 GATACCATCGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAA 62431 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| || |||||||| | || || | || || ||| | ||||||||| Sbjct 62432 CAACGTCTTATTTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACTCTATCGGACTATAAT 62491 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || || ||||| ||| | | ||||| ||||| Sbjct 62492 ATTCAAAAAGAATCTACCCTCCATCTTGTCCTCAGGCTTCGTGGTGG 62538 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || |||||||| || || || || || || | Sbjct 62540 ATGCAAATCTTCGTAAAAACACTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCTTCA 62599 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||| || || ||||| ||||| || ||||| || || ||| Sbjct 62600 GACACCATAGAAAATGTAAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGATCAG 62659 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| |||||| | ||||||| ||| Sbjct 62660 CAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCAGACTACAAT 62719 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || | || ||||||| || || || Sbjct 62720 ATCCAAAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGAGG 62766 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || || |||||||| || || || || || || | Sbjct 62768 ATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCG 62827 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||||||||| || ||||||||||| || ||||| || |||||| Sbjct 62828 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 62887 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| || || || || |||| || ||||| | || || ||| Sbjct 62888 CAGCGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGATTACAAT 62947 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| || ||||| || || ||||| || Sbjct 62948 ATCCAGAAAGAATCGACCCTCCATCTTGT 62976 Score = 131 bits (144), Expect = 2e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| || |||||||||| || ||||||||||| || ||||| || ||||||||||| Sbjct 61921 CATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGCG 61980 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 ||| || |||||||| || || || || |||| ||||||||| | || || ||| |||| Sbjct 61981 TCTCATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCCTCTCTGATTACAATATCCA 62040 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| || ||||| || || || | | || || ||||| Sbjct 62041 AAAGGAGTCTACTCTCCACCTTGTGCTCAGACTGCGTGGTGG 62082 >seq64647 Length=8232 Score = 129 bits (142), Expect = 7e-25 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 32009 AGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACA--TGAAGGTGGCGCAGCT 32066 ||||| ||| | | ||||| ||| ||| | | || || | |||| ||||| ||||| Sbjct 7791 AGGTGGTATTCACGTGCCTGAAGCGTAAC--GACAAGCGAGAGGTGAAAGTGGCTCAGCT 7848 Query 32067 GTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCAC 32126 | ||||| | | ||||| || || |||||||||||||| || | ||| ||| | ||| Sbjct 7849 GGCGGGCAGCATTGCAGAACACACCGCCTATCACCACGGTGAAGTGTCCCTCATGTCCAC 7908 Query 32127 CATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATC 32186 ||||||||||| || |||||||| || || | || ||| | ||| | || |||| Sbjct 7909 TATTGTCAACCTGGCCCAGAACTTCGTTGGCTCCAACAACATCAACGTTCTGCAGCCCAT 7968 Query 32187 TGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTT 32246 ||| ||||| || || || ||| || || || || ||||||| || |||||||| || Sbjct 7969 TGGTCAGTTCGGTACGCGTCTCATGGGCGGAAAAGACTCTGCGAGTTCTCGTTACATTTT 8028 Query 32247 CACC 32250 |||| Sbjct 8029 CACC 8032 >seq7011 Length=120798 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || |||||| || || ||||| || || || ||||| ||| || || |||||||| Sbjct 26910 GCCTTTGCCGCAGTTGAGGGAATCTTTTTCTCCGGGTCCTTCGCCTCCATCTTCTGGCTG 26969 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 || ||||| ||||||||||| || ||| | || |||||||| ||||| ||||||||| Sbjct 26970 AAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTTATCTCCCGGGACGAG 27029 Query 64846 GGGCTCCACCAAGAATTTGC 64865 ||||||||| || ||||| Sbjct 27030 GGGCTCCACACCGACTTTGC 27049 >seq4196 Length=56364 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || ||||| ||||| || || |||||| | Sbjct 9693 ATGCAGATATTTGTGAAAACCCTCACGGGTAAGACCATTACCCTAGAAGTTGAGGCTTCA 9752 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || | |||||||| || || ||||| ||||| || ||||| Sbjct 9753 GATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAAGAGGGTATTCCACCTGACCAA 9812 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| | || ||||||||||| ||||| || || |||| Sbjct 9813 CAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAAGATG 9849 >seq32741 Length=53758 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 |||| ||||| |||||| ||||| | | ||||| || || |||||||||||||| || | Sbjct 39270 TGAAAGTGGCTCAGCTGGCGGGCAGCATTGCAGAACACACCGCCTATCACCACGGTGAAG 39211 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 ||| || | || ||||||||||| || |||||||| || || | || ||| | | Sbjct 39210 TGTCCCTTATGTCTACTATTGTCAACCTGGCCCAGAACTTCGTTGGCTCCAACAACATCA 39151 Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230 || | || |||| ||| ||||| || || || ||| || || || || |||||| Sbjct 39150 ACGTTCTGCAGCCCATTGGTCAGTTCGGTACGCGTCTCATGGGCGGAAAAGACTCTGCGA 39091 Query 32231 GCT 32233 ||| Sbjct 39090 GCT 39088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563347658548400