Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6977 143 2e-29 >seq6977 Length=186913 Score = 143 bits (158), Expect = 2e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||||| |||||||| |||||| || |||||| ||||||||||| || || || || Sbjct 61426 GCCGCCTCGAAGACGCAGCACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGA 61367 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || ||||||| | ||||| || ||||| || | |||||| ||||| || || Sbjct 61366 CAGGGTACGACCGTCTTCCAACTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGG 61307 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCC 34656 | || ||||| ||| ||| ||| | || || | ||| |||||| ||| || Sbjct 61306 AATGCCTTCCTTATCT-TGAATTTTAGCCTTTACATTCTCAATGGTGTCTGAAGCT-TCG 61249 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || || |||||||||| ||||| |||||||||||||| Sbjct 61248 ACTTCCAAGGTGATTGTCTTACCGGTTAGAGTTTTAACAAAAATCTGCAT 61199 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| |||||| || || ||| ||||||||| || || || ||||| Sbjct 61881 CCTCCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCTGAC 61822 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||| || || ||||| || || | |||||||||||| || || Sbjct 61821 AAAGTACGACCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGGGGA 61762 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || |||| |||| || ||| | ||| ||||| ||| || Sbjct 61761 ATACCTTCCTTATCCTGGATC-TTTGCCTTCACGTTTTCAATGGTGTCCGAAGCCTCGAC 61703 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || ||||| | || ||||| ||||| ||||| Sbjct 61702 TTCCAGGGTGATTGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 61655 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||| || || || || ||||||||||| || ||||| Sbjct 62310 CCACCTCTCAAACGTAGCACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAC 62251 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||||||||| || |||||||| || || | |||||||||||| || || Sbjct 62250 AAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 62191 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||| | || || | ||| || || | ||||| Sbjct 62190 ATGCCTTCTTTGTC-CTGAATTTTAGCCTTCACATTCTCAATCGTATCCGAGGCTTCCAC 62132 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | || ||||| || ||||| | |||||||| |||||||||||| Sbjct 62131 TTCAAGAGTAATCGTCTTGCCGGTCAGGGTTTTCACGAAAATCTGCATG 62083 Score = 109 bits (120), Expect = 3e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||||||||||||| |||||| || || || || || ||||| || || Sbjct 63213 AGTCGCAGAACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGGGTGCGG 63154 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| |||||||| || | |||||| ||||| || || | || ||| Sbjct 63153 CCATCTTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGAATACCTTCC 63094 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || || ||||||| || | | ||| || || | ||| || || | ||| Sbjct 63093 TTATCCTGGATCTTTGCCTTCACATTTTCAATAGTATCCGAGGCCTCGACCTCAAGGGTG 63034 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| | || ||||| || |||||||| Sbjct 63033 ATTGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 62996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 310983225549935