Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6977 187 2e-42 seq4196 93.3 4e-14 >seq6977 Length=186913 Score = 187 bits (206), Expect = 2e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| |||||||||||| | |||||||||||||||||| | || Sbjct 62083 CATGCAGATTTTCGTGAAAACCCTGACCGGCAAGACGATTACTCTTGAAGTGGAAGCCTC 62142 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||||| || || |||||||| |||||||||||||| || ||||| || Sbjct 62143 GGATACGATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCCCCCGACCA 62202 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | |||||| || || | |||||| | ||| | || || ||||| Sbjct 62203 ACAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCCGCACCTTGTCAGACTACAA 62262 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || |||||| | || ||||| | |||||| | ||||| || Sbjct 62263 CATTCAAAAAGAATCGACCCTTCACTTGGTGCTACGTTTGAGAGGTGGTAT 62313 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||| ||| | || || | ||||| ||| | || Sbjct 61199 ATGCAGATTTTTGTTAAAACTCTAACCGGTAAGACAATCACCTTGGAAGTCGAAGCTTCA 61258 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||||||||| || |||||||| || || || || Sbjct 61259 GACACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATTCCTCCTGACCAG 61318 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || |||||||| ||||||||| || ||| | || || ||||| Sbjct 61319 CAGCGTCTTATCTTTGCTGGCAAACAGTTGGAAGACGGTCGTACCCTGTCTGACTACAAT 61378 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || ||||| ||||| | || || ||||| Sbjct 61379 ATTCAAAAGGAATCCACTCTTCACTTGGTGCTGCGTCTTCGAGGCGGCAT 61428 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || || || || || || ||||||||| ||||||| || ||||| || | Sbjct 61423 CGGCATGCAAATTTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTGGAAGTAGAGGC 61482 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | ||||| | || || ||| || || ||||| ||||| || || ||||| Sbjct 61483 TTCGGACACCATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCCGA 61542 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | |||||||| |||||||||||| || || | || ||||| Sbjct 61543 CCAGCAGCGTCTTATTTTTGCCGGCAAGCAATTGGAAGACGGTCGCACTCTGTCTGATTA 61602 Query 27164 CAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| ||||| ||||| || ||| | ||| Sbjct 61603 CAATATTCAGAAGGAATCCACCCTCCAT 61630 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| || || |||||| | || || || ||||| ||| | || Sbjct 62540 ATGCAAATCTTCGTAAAAACACTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCTTCA 62599 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| || || || || ||||| || || |||||||| Sbjct 62600 GACACCATAGAAAATGTAAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGATCAG 62659 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | ||||| || || | || || ||||| Sbjct 62660 CAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCAGACTACAAT 62719 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| ||||| |||| || || || Sbjct 62720 ATCCAAAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGAGGTAT 62769 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || |||||||| | || || ||||| || || | || Sbjct 62996 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACAATCACCCTTGAGGTCGAGGCCTCG 63055 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||| || || || || ||||| || || ||||| || Sbjct 63056 GATACTATTGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAG 63115 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||| ||||||| | ||| |||| || ||||| Sbjct 63116 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAT 63175 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | ||||||||| |||| | || |||||| Sbjct 63176 ATCCAGAAGGAGTCCACTCTCCATTTGGTTCTGCGACTCCGCGGTGGC 63223 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || || ||||| || | || Sbjct 61655 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACAATCACCCTGGAAGTCGAGGCTTCG 61714 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| || || || || ||||| || || ||||| ||| Sbjct 61715 GACACCATTGAAAACGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAA 61774 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | ||||| || || | || || ||||| Sbjct 61775 CAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCAGACTACAAT 61834 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| ||| | || ||||| ||||| |||| || || Sbjct 61835 ATCCAAAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGAGG 61881 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098 ||| | || ||| | ||||||| || || || || || ||||| |||||||| || Sbjct 61907 GAAGCCTCGGACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCC 61966 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC 27158 ||||| || |||||| | || | || |||||||| ||||||| || ||| | || Sbjct 61967 CCCGACCAGCAGCGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCCTCTCT 62026 Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || ||||||||||| || | || | || | | |||| |||||||| Sbjct 62027 GATTACAATATCCAAAAGGAGTCTACTCTCCACCTTGTGCTCAGACTGCGTGGTGGCAT 62085 >seq4196 Length=56364 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| ||||| || || || ||| | ||||| || ||||| || | || Sbjct 9692 CATGCAGATATTTGTGAAAACCCTCACGGGTAAGACCATTACCCTAGAAGTTGAGGCTTC 9751 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | |||||| ||||||||||| ||||| || || ||||| || || Sbjct 9752 AGATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAAGAGGGTATTCCACCTGACCA 9811 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||| | | || | || ||||| || | ||||| Sbjct 9812 ACAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAAGA 9847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429744523646135