Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6977 86.0 5e-12 >seq6977 Length=186913 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||| |||| | || | |||||| || || ||| || || Sbjct 61442 TAACGAAAATTTG--CATGCCGCCTCGAAGACGCAGCACCAAGTGAAGAGTGGATTCCTT 61385 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| || || | || || || |||| || | ||||||||| ||||| ||||| Sbjct 61384 TTGAATATTGTAGTCAGACAGGGTACGACCGTCTTCCAACTGTTTGCCAGCAAAGATAAG 61325 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 |||||||||||| | || | || || || || ||||| || | || | | Sbjct 61324 ACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTCTCAAT 61265 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 || || | || || |||| ||||| | || || || || ||||||||||| || Sbjct 61264 GGTGTCTGAAGCTTCGACTTCCAAGGTGATTGTCTTACCGGTTAGAGTTTTAACAAAAAT 61205 Query 39279 TTGCAT 39284 ||||| Sbjct 61204 CTGCAT 61199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || ||||| ||||| | || || ||| |||| || || || ||||| ||||| Sbjct 60933 TCTTTCTGGATATTGTAATCAGAGAGGGTACGTCCGTCCTCCAGTTGCTTGCCAGCAAAG 60874 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||||| ||| | || || |||||| ||| || || | || Sbjct 60873 ATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTC 60814 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || | || || || | |||||| | || || || || ||||| || Sbjct 60813 TCAATGGTGTCAGAGGCTTCAACTTCGAGCGTGATGGTCTTGCCAGTTAGGGTTTTCACG 60754 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 60753 AAGATCTGCAT 60743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| || || ||||| || || | ||| || || | || || Sbjct 63204 ACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGGGTGCGGCCATCTTCC 63145 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || |||||||||||||||| ||| | | || || ||| | Sbjct 63144 AGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGAATACCTTCCTTATCCTGG 63085 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | | | | ||||| | ||| || || | ||||| |||| Sbjct 63084 ATCTTTGCCTTCACATTTTCAATAGTATCCGAGGCCTCGACCTCAAGGGTGATTGTTTTG 63025 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || ||||| ||||| Sbjct 63024 CCGGTGAGGGTCTTCACGAAGATCTGCAT 62996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||| ||||| | || || || | || || ||||||||||| ||||| Sbjct 62047 CTCCTTTTGGATATTGTAATCAGAGAGGGTACGACCATCTTCCAGCTGTTTGCCAGCAAA 61988 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || |||||||||||||||| ||| | || || |||||| ||| || Sbjct 61987 GATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 61940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424432516702535