Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6977 134 9e-27 seq4196 87.8 1e-12 seq23011 82.4 5e-11 >seq6977 Length=186913 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || || ||||| ||||| ||||| || || || Sbjct 62084 ATGCAGATTTTCGTGAAAACCCTGACCGGCAAGACGATTACTCTTGAAGTGGAAGCCTCG 62143 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||||| ||||||||||| | || || || || Sbjct 62144 GATACGATTGAGAATGTGAAGGC-TAAAATTCAGGACAAAGAAGGCATTCCCCCCGACCA 62202 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || ||||| || || || ||||||| ||||| || || ||||| Sbjct 62203 ACAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCCGCACCTTGTCAGACTACAA 62262 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || | || || || || | ||| |||| || Sbjct 62263 CATTCAAAAAGAATCGACCCTTCACTTGGTGCTACGTTTGAGAGGTGG 62310 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| |||||||| || || || || || || ||||| || | || Sbjct 61427 ATGCAAATTTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTGGAAGTAGAGGCTTCG 61486 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| || ||||| ||||| | || || || || Sbjct 61487 GACACCATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAG 61546 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| ||| ||||||||| |||||| | |||||||| Sbjct 61547 CAGCGTCTTATTTTTGCCGGCAAGCAATTGGAAGACGGTCGCACTCTGTCTGATTACAAT 61606 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| | ||| | || | ||| | || ||||| Sbjct 61607 ATTCAGAAGGAATCCACCCTCCATCTTGTCCTCAGGCTTCGTGGAGG 61653 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||||||||| || || || || ||||| |||||||| || || || Sbjct 62768 ATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCG 62827 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || || || || Sbjct 62828 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 62887 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| |||||||| |||||||| | ||||| | |||||||| Sbjct 62888 CAGCGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGATTACAAT 62947 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | ||| | || | ||| |||| || || Sbjct 62948 ATCCAGAAAGAATCGACCCTCCATCTTGTGCTTAGGCTGCGTGGCGG 62994 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| ||||| || || || || || || Sbjct 62996 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACAATCACCCTTGAGGTCGAGGCCTCG 63055 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || ||| || || || |||||| | || || || || Sbjct 63056 GATACTATTGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAG 63115 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||||||||| |||||||| | ||||| | || ||||| Sbjct 63116 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAT 63175 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| | ||||| ||| Sbjct 63176 ATCCAGAAGGAGTCCACTCTCCATTTGGTT 63205 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||| ||||||||||| || | Sbjct 60743 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACCATCACGCTCGAAGTTGAAGCCTCT 60802 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || || || || Sbjct 60803 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 60862 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| |||||||| |||| ||| || | |||||||| Sbjct 60863 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGACGTACCCTCTCTGATTACAAT 60922 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | ||| | || | ||| |||| || || Sbjct 60923 ATCCAGAAAGAATCTACCCTCCATCTTGTGCTTAGGCTGCGTGGCGG 60969 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| || || || || || ||||| | ||||| || | | Sbjct 61199 ATGCAGATTTTTGTTAAAACTCTAACCGGTAAGACAATCACCTTGGAAGTCGAAGCTTCA 61258 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| |||||| || || ||||| | || || || || Sbjct 61259 GACACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATTCCTCCTGACCAG 61318 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| |||||||| ||||||||| || || | || ||||| Sbjct 61319 CAGCGTCTTATCTTTGCTGGCAAACAGTTGGAAGACGGTCGTACCCTGTCTGACTACAAT 61378 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || ||||| Sbjct 61379 ATTCAAAAGGAATCCAC 61395 >seq4196 Length=56364 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || |||||||||||||| || || || || || |||||||| | Sbjct 9690 AACATGCAGATATTTGTGAAAACCCTCACGGGTAAGACCATTACCCTAGAAGTTGAGGCT 9749 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| | |||| | ||| |||||| || ||||| ||| | || || || Sbjct 9750 TCAGATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAAGAGGGTATTCCACCTGAC 9809 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||||| | | || ||||| ||||| || || ||||| Sbjct 9810 CAACAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAAGA 9847 >seq23011 Length=82770 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| |||||||| || || ||||| || || || || | | Sbjct 77722 ATGCAGATCTTCGTGAAAACACTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCT 77663 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| || || ||||| |||||| | || || |||||| Sbjct 77662 GATACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAA 77603 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 ||||| | || ||||| || || || || ||||| Sbjct 77602 CAGCGACTTATCTTTGCAGGAAAGCAGCTCGAAGA 77568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333986112761060