Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6977 183 7e-41 seq23011 129 1e-24 seq79008 86.0 1e-11 >seq6977 Length=186913 Score = 183 bits (202), Expect = 7e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||||||||||| || ||| ||| || Sbjct 62315 CAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCGGAT 62374 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||||||||||||| ||||| || || || ||||| ||| Sbjct 62375 ACCATCGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAACAA 62434 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| |||||||| || ||| | ||||| || | ||||| | || ||||| | Sbjct 62435 CGTCTTATTTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACTCTATCGGACTATAATATT 62494 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || |||||||| Sbjct 62495 CAAAAAGAATCTACCCTCCATCTTGT 62520 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || || || || ||||||||||| || ||| ||| ||| Sbjct 62771 CAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCGGAC 62830 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| ||||| || || || |||||||| Sbjct 62831 ACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAG 62890 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || |||||||| |||||||| | || || | ||||| || || Sbjct 62891 CGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGATTACAATATC 62950 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || |||||||| Sbjct 62951 CAGAAAGAATCGACCCTCCATCTTGT 62976 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| ||||| || |||||||| || || || || ||| Sbjct 61658 CAAATTTTCGTGAAGACCCTCACCGGAAAGACAATCACCCTGGAAGTCGAGGCTTCGGAC 61717 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||| ||||| || ||||| || || || ||||| || Sbjct 61718 ACCATTGAAAACGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAACAG 61777 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| |||||||| | ||| | | || || || || Sbjct 61778 CGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCAGACTACAATATC 61837 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 61838 CAAAAGGAGTCCACCCTGCA-CTTG 61861 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || ||||||||||| || ||| |||||| Sbjct 62543 CAAATCTTCGTAAAAACACTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCTTCAGAC 62602 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||| ||||| || ||||| || || || || ||||| Sbjct 62603 ACCATAGAAAATGTAAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGATCAGCAG 62662 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| |||||||| | ||| | | || || || || Sbjct 62663 CGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCAGACTACAATATC 62722 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 62723 CAAAAGGAGTCCACCCTGCA-CTTG 62746 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || ||||| ||||| || ||| ||| ||| Sbjct 60746 CAGATCTTCGTGAAAACCCTAACTGGCAAGACCATCACGCTCGAAGTTGAAGCCTCTGAC 60805 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| ||||| || || || |||||||| Sbjct 60806 ACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAG 60865 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || || || || ||| | || || | ||||| || || Sbjct 60866 CGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGACGTACCCTCTCTGATTACAATATC 60925 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || |||||||| Sbjct 60926 CAGAAAGAATCTACCCTCCATCTTGT 60951 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || || ||||| || || || || ||| Sbjct 61430 CAAATTTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTGGAAGTAGAGGCTTCGGAC 61489 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||| |||||||| |||||||||||||| |||||||| Sbjct 61490 ACCATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAGCAG 61549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || ||||| || || | ||||| || | ||||| | ||||| || | Sbjct 61550 CGTCTTATTTTTGCCGGCAAGCAATTGGAAGACGGTCGCACTCTGTCTGATTACAATATT 61609 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || |||||||| Sbjct 61610 CAGAAGGAATCCACCCTCCATCTTGT 61635 Score = 140 bits (154), Expect = 8e-28 Identities = 157/206 (76%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || ||||| || || || |||||| ||| || Sbjct 62087 CAGATTTTCGTGAAAACCCTGACCGGCAAGACGATTACTCTTGAAGTGGAAGCCTCGGAT 62146 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || ||||||||||||||||| || || || ||||| || Sbjct 62147 ACGATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCCCCCGACCAACAG 62206 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || ||||||||||| || ||||| ||||| || | || |||| | || || ||| | Sbjct 62207 CGTCTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCCGCAC-CTTGTCAGACTACAACAT 62265 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 62266 TCAAAAAGAATCGACCCTTCA-CTTG 62290 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||||| || || || || |||||| | || || ||| |||||| Sbjct 61202 CAGATTTTTGTTAAAACTCTAACCGGTAAGACAATCACCTTGGAAGTCGAAGCTTCAGAC 61261 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || ||||| || || ||||| || ||||| |||||||| Sbjct 61262 ACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATTCCTCCTGACCAGCAG 61321 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||| | ||||| || | || || | || || || | Sbjct 61322 CGTCTTATCTTTGCTGGCAAACAGTTGGAAGACGGTCGTACCCTGTCTGACTACAATATT 61381 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 61382 CAAAAGGAATCCACTCTTCA-CTTG 61405 >seq23011 Length=82770 Score = 129 bits (142), Expect = 1e-24 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| ||||| || || || |||||||| |||||||| || || Sbjct 77719 CAGATCTTCGTGAAAACACTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCTGAT 77660 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||||| || ||||| ||||| || || || || || || Sbjct 77659 ACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAG 77600 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 ||||||||||| || ||||| |||||||||||||| ||| Sbjct 77599 CGACTTATCTTTGCAGGAAAGCAGCTCGAAGATGGCAGG 77561 >seq79008 Length=3354 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || || ||||| || || || ||| ||||| || ||||| ||||| || || || || Sbjct 3348 TCTGATACCATTGAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCTGAT 3289 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 || || ||||||||||| || ||||| |||||||||||||| ||| Sbjct 3288 CAACAGCGACTTATCTTTGCAGGAAAGCAGCTCGAAGATGGCAGG 3244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1188667822493830