Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Philaenus_20spumarius_20[genbank_20GCA_5F002233535.1_202017-07-25] 1,822,983 sequences; 1,248,087,067 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1475270 158 3e-33 seq922613 154 3e-32 seq1770947 116 8e-21 seq225474 116 8e-21 seq1718873 113 1e-19 seq523010 105 2e-17 seq555725 87.8 4e-12 >seq1475270 Length=306 Score = 158 bits (174), Expect = 3e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||||||||| || || || | || | ||||||||| || |||||||| ||||| | Sbjct 66 CTTTCTGAATATTGTAATCTGACAAGGTACGACCGTCTTCAAGCTGTTTTCCCGCAAATA 125 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | ||||||||||| || || |||||||||||||| || || || || ||||| |||| Sbjct 126 TCAATCTCTGTTGATCTGGTGGAATTCCTTCTTTATCTTGGATTTTAGCCTTTACGTTTT 185 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||||| ||| ||||| || ||||| || ||||||||||| | ||||| |||| Sbjct 186 CAATAGTATCTGAAGGCTCTACTTCGAGTGTGATCGTCTTACCAGTCAAAGTTTTCACAA 245 Query 104550 ATATCTGCAT 104559 | || ||||| Sbjct 246 AAATTTGCAT 255 >seq922613 Length=1439 Score = 154 bits (170), Expect = 3e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||||| |||||||| || || | || || || || ||||| |||||||||| Sbjct 265 CTTTCTGGATATTGTAGTCAGAAAGTGTGCGGCCATCCTCAAGCTGTTTCCCAGCAAAAA 206 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||||||||| ||||| ||||| ||||||||||| ||||| ||||| || || | Sbjct 205 TAAGACGCTGTTGATCTGGAGGGATTCCCTCTTTATCCTGGATCTTGGCTTTGACGTTCT 146 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || ||||| || |||| |||||||||||| || || | || || |||| Sbjct 145 CGATAGTGTCTGATGGTTCCACTTCTAATGTAATAGTCTTTCCTGTCAAAGTCTTCACAA 86 Query 104550 ATATCTGCAT 104559 |||| ||||| Sbjct 85 ATATTTGCAT 76 >seq1770947 Length=686 Score = 116 bits (128), Expect = 8e-21 Identities = 127/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 238591 TATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAA 238650 |||||||||| || ||||||||| | || | ||| ||||||||| ||||||| || | Sbjct 489 TATGGAATTCAGCTCAGATACAATTAGTCAAGGAAGGTAAAATGCATGGTTTCTTGCGCA 430 Query 238651 TGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATA 238710 |||||||||| ||||| |||||||| ||||| | ||||| | |||||| |||| | Sbjct 429 TGTATTGGGCAAAAAAAATACTTGAGTGGACGAAGTCTCCTGAAGAAGCT-TTAGCCAAC 371 Query 238711 G-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTA 238755 | ||||||| | || ||||||||| | || |||| ||||||| Sbjct 370 GCTATTTATTTAAATGATAAATACAGCATGGATGGTAGAGATCCTA 325 >seq225474 Length=4644 Score = 116 bits (128), Expect = 8e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||| |||||| || || || || | || |||||||||||||| || ||||| || Sbjct 604 TCCTCCTCGTAGCCTGAGGACAAGGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCTGA 663 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || |||||||| ||||| || ||||| || ||||| || | ||||||||| |||||||| Sbjct 664 AAGTGTTCTACCATCTTCCAGCTGTTTACCGGCAAAGATCAACCTCTGTTGGTCAGGAGG 723 Query 104452 TATTCCT 104458 |||||| Sbjct 724 AATTCCT 730 >seq1718873 Length=527 Score = 113 bits (124), Expect = 1e-19 Identities = 162/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 165224 GGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAATAAACCTTTA 165283 || || ||| |||| ||||| || ||||| | ||||| ||| |||| | ||| || || Sbjct 411 GGAATATGTGATAATTTGTTGACATGTATTGCGAGAGCATGGGATATGAGTAAGCCATTT 352 Query 165284 CTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAGCAGCATATA 165343 | || |||||||| |||||||| | |||||||| |||||| | || | ||||| ||| Sbjct 351 TTGTTTTGTCCAGCGATGAATACTCGAATGTGGGATCATCCTTTCACAGGACAGCAAATA 292 Query 165344 GAAACTCTTAA-GCATATGGGGTACATAGAAGTTGAGTGTATTGAGAAAAAGCTAGCT-T 165401 | | |||| | | |||| |||||||||||| |||| | || |||| | | | | Sbjct 291 -ACTGTGTTAAAGAACCTGGGATACATAGAAGTTCCTTGTA-TCAGTAAAACATTGATGT 234 Query 165402 GTGGTGATATTGGAAAAGGTGCCATGGCAGAAGTTACTGATAT 165444 |||| || | ||| ||| |||||||| ||||| ||||||| Sbjct 233 GTGGAGACACTGGTTTAGGAGCCATGGCTGAAGTACCTGATAT 191 >seq523010 Length=1989 Score = 105 bits (116), Expect = 2e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || || ||||||| || | ||| ||||| | || ||||||||||| | Sbjct 121 CTTTCTGAATGTTGTAATCAGATAATGTGCGACCATCTTCCAACTGCTTTCCAGCAAAGA 62 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | |||||| ||||| ||||| || ||||| || || || || |||||||| ||||||| Sbjct 61 TCAACCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTTT 2 Query 104490 C 104490 | Sbjct 1 C 1 >seq555725 Length=2460 Score = 87.8 bits (96), Expect = 4e-12 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| ||| |||| ||| | |||| ||| || | |||||||| || | Sbjct 1639 TGGTGGTACTATTTCTCCAAATTGTTGGAATTTTCAGACACATTTTTCTTCATACTCAGG 1580 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT--ACTT 78611 || ||| || ||| | | ||||| || || || || || | || ||||| ||| Sbjct 1579 AAAAAAGAGAAACAACTGACATTTCTTCACGTGTACCACCACTCGACCATGTTCTCACTC 1520 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAGCGTTTCTAGGAGCTGAAATAA 78671 ||| ||||| || ||||||||| | | | ||| | |||||||| ||| | | Sbjct 1519 TGG--TGGATCGGCATTAAATGGGTGCCGAGTGGATCAACGTTTCTACCAGCGATGGTTA 1462 Query 78672 ATTCATTCGTACACGTTATTATGTATACTTATTACGGTATTGCTGCATGCGGCCCTACAT 78731 |||| ||| | || || ||||||| ||||||||||| | ||||| | || ||| ||| Sbjct 1461 ATTCTTTCATCCATGTACTTATGTACTCTTATTACGGTCTAGCTGCCTTAGGTCCT-CAT 1403 Query 78732 TTCG-TAAGTATTTGTGGTGGAAGAGATATCTTACTAT 78768 | | ||||| | |||||||||| ||| | ||||| Sbjct 1402 ATAGCCAAGTACCTTTGGTGGAAGAAATACTTGACTAT 1365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1124505222472964