Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Philaenus_20spumarius_20[genbank_20GCA_5F002233535.1_202017-07-25] 1,822,983 sequences; 1,248,087,067 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1648874 136 3e-27 seq1475270 102 5e-17 seq479109 98.7 7e-16 seq922613 93.3 3e-14 seq337650 82.4 5e-11 >seq1648874 Length=424 Score = 136 bits (150), Expect = 3e-27 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||||||| || || || || || ||||| || |||||||| || ||||| Sbjct 165 CCAACAAAATATTTTGGCTGTGAGCTAGGTGCTCAAACCCAGTTTGACTTTAAGAACGAC 224 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || |||||||| ||||| || ||| | || | || | || ||| | || || || ||| Sbjct 225 CGATTCATCGTGAACGGTTCACATGATGCTTCTAAATTACAAGACCTTCTGGATGGATTT 284 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCT 6500 ||||| ||||||||| |||| | | || || || || ||||| | || |||||| | Sbjct 285 ATTCGTAAGTTTGTGTTGTGCCCAGGTTGTGACAATCCAGAGACAAACCTGATTGTGAGT 344 Query 6501 ACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGAT 6560 |||||| | ||||| ||| || |||||||| ||||| | | ||||| || || Sbjct 345 GCCAAGAAAGGAACCATTCATCAAGGTTGCAAAGCTTGCGGCTTCTATGGCCCACTTGAA 404 Query 6561 TTATCACACAAACTCAACAC 6580 || |||||||||||||| Sbjct 405 TTCAACCACAAACTCAACAC 424 >seq1475270 Length=306 Score = 102 bits (112), Expect = 5e-17 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| |||||||||||||| ||||| ||| |||| || | |||||||| |||||| Sbjct 65 CCTTTCTGAATATTGTAATCTGACAAGGTACGACCGTCTTCAAGCTGTTTTCCCGCAAAT 124 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | | |||||||| | || | |||||||| || ||||| ||| || || Sbjct 125 ATCAATCTCTGTTGATCTGGTGGAATTCCTTCTTTATCTTGGATTTTAGCCTTTACGTTT 184 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||||||| | || ||||| | ||| || || ||||| ||||| |||||||| Sbjct 185 TCAATAGTATCTGAAGGCTCTACTTCGAGTGTGATCGTCTTACCAGTCAAAGTTTTCACA 244 Query 38307 AATATCTGCAT 38317 || || ||||| Sbjct 245 AAAATTTGCAT 255 >seq479109 Length=1621 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATC 25961 |||||||||||||||||||| ||||||||||||| |||| || ||| ||||||||||||| Sbjct 677 AAGCCCGTTCCCTTGGCTGTAGTTTCGCTAGATATTAGACAGCGGG-AATCTCGTTAATC 735 Query 25962 CTTTCATGCGC 25972 | ||||||||| Sbjct 736 CGTTCATGCGC 746 >seq922613 Length=1439 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || |||||||| ||||| | || | || || | ||||| || ||||| Sbjct 266 CCTTTCTGGATATTGTAGTCAGAAAGTGTGCGGCCATCCTCAAGCTGTTTCCCAGCAAAA 207 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || |||||||| | |||| || ||||| ||| || || || || ||| Sbjct 206 ATAAGACGCTGTTGATCTGGAGGGATTCCCTCTTTATCCTGGATCTTGGCTTTGACGTTC 147 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || ||| ||| ||| ||||||||||||||||| || || ||||| || ||||| Sbjct 146 TCGATAGTGTCTGATGGTTCCACTTCTAATGTAATAGTCTTTCCTGTCAAAGTCTTCACA 87 Query 38307 AATATCTGCAT 38317 ||||| ||||| Sbjct 86 AATATTTGCAT 76 >seq337650 Length=716 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 5/73 (7%) Strand=Plus/Plus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGTTAATCC 25962 ||||||||||| ||||||||||||||||||| |||| | || |||||| ||||||| Sbjct 1 GTTCCCTTGGCAGTGGTTTCGCTAGATAGTACATAGGTACAGCGGGAATCTCCTTAATCC 60 Query 25963 TTTCATGCGCGTC 25975 |||||||||||| Sbjct 61 ATTCATGCGCGTC 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327505475309873