Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Philaenus_20spumarius_20[genbank_20GCA_5F002233535.1_202017-07-25] 1,822,983 sequences; 1,248,087,067 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1475270 141 2e-28 seq922613 104 4e-17 seq158920 87.8 3e-12 >seq1475270 Length=306 Score = 141 bits (156), Expect = 2e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||| || || || || || | | || || | |||||||| ||||| || ||||| Sbjct 73 AATATTGTAATCTGACAAGGTACGACCGTCTTCAAGCTGTTTTCCCGCAAATATCAATCT 132 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||| || || ||||||||||||||||| ||||| | |||| ||| |||||| Sbjct 133 CTGTTGATCTGGTGGAATTCCTTCTTTATCTTGGATTTTAGCCTTTACGTTTTCAATAGT 192 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| ||| ||||| || || || || ||||| || | ||||| ||||| ||||| Sbjct 193 ATCTGAAGGCTCTACTTCGAGTGTGATCGTCTTACCAGTCAAAGTTTTCACAAAAATTTG 252 Query 193358 CAT 193360 ||| Sbjct 253 CAT 255 >seq922613 Length=1439 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || | || | ||| || | ||||| || |||||||| | | | Sbjct 257 ATATTGTAGTCAGAAAGTGTGCGGCCATCCTCAAGCTGTTTCCCAGCAAAAATAAGACGC 198 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| ||||| |||||||| || || |||| ||| | || ||||| Sbjct 197 TGTTGATCTGGAGGGATTCCCTCTTTATCCTGGATCTTGGCTTTGACGTTCTCGATAGTG 138 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||||| || ||||| || ||||| | || || |||||||||||| Sbjct 137 TCTGATGGTTCCACTTCTAATGTAATAGTCTTTCCTGTCAAAGTCTTCACAAATATTTGC 78 Query 193359 AT 193360 || Sbjct 77 AT 76 >seq158920 Length=526 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 193259 TTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAG 193318 ||| || ||||| ||||| | ||| | |||| |||||| || || | |||||| || || Sbjct 1 TTCCTTGTCTTGGATTTTTGCTTTGACATTTTCAATAGTGTCTGATGGCTCAACCTCGAG 60 Query 193319 AGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||||||||||| || || || ||||| ||||| |||||||| ||| Sbjct 61 GGTTATAGTTTTGCCAGTGAGAGTTTTCACAAAAATTTGCATCTTA 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 879153716536560