Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Philaenus_20spumarius_20[genbank_20GCA_5F002233535.1_202017-07-25] 1,822,983 sequences; 1,248,087,067 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq340977 131 1e-25 seq630901 100 2e-16 seq1682337 96.9 3e-15 seq1813012 93.3 3e-14 >seq340977 Length=2472 Score = 131 bits (144), Expect = 1e-25 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 19531 TTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAG 19590 ||||||| || ||| |||||| ||||| || | |||||| | || || ||||| ||| Sbjct 534 TTAGGGCCTAATAGTGGTTTGCATATTATTATTTTTGATGAAATTGATGCCATCTGCAAG 593 Query 19591 CAAAGAGGTTCTGGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTG 19644 ||||| |||| || | | ||| |||||||||||||| || ||||| || || Sbjct 594 AGTAGAGGATCTGTTGGAGGCAATACTGGTGTACATGACACTGTGGTGAATCAGCTACTT 653 Query 19645 TCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 |||| | || |||||| | || |||||||||||||||||||||| |||||||| ||| Sbjct 654 GCAAAGATTGATGGTGTTGAACAGTTGAATAATATTTTAGTTATTGGTATGACTAACAGA 713 Query 19705 CTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGA 19748 ||| | || || ||||| | |||| ||| ||||||| Sbjct 714 AAGGATATGATTGATGATGCCTTGATGAGACCTGGTAGGTTGGA 757 >seq630901 Length=3269 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| || ||||| ||| ||||||||||||| ||||| ||||| || || || || Sbjct 1060 AGATTTGTTGTATTTCCTATTGAATATCATGACATCTGGCACATGTATAAGAAGGCTGAG 1001 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 || || |||||||| ||||||||||||||| || |||| Sbjct 1000 GCTTCTTTTTGGACTGCAGAAGAAGTTGATCTGTCTAA 963 >seq1682337 Length=465 Score = 96.9 bits (106), Expect = 3e-15 Identities = 227/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||| ||| | ||||| || ||||| || |||| | |||||| |||||| | ||| | Sbjct 437 AGGAGATTTGGGTCCAGTGTATGGCTTCCAGTGGAGACATTACGGAGCAGATTATAAGGA 378 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 |||| |||| ||| | |||| | || |||||| || ||||| ||| | Sbjct 377 CATGTTTGCTGACTATTCAGGCCAAGGCGTCGACCAATTAAAGAATGTTATTTCAACGTT 318 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 || | |||| || | | | || ||| |||| || ||||| || ||| | | Sbjct 317 AAAGACAAATCCTAATGACAGGAGGATTATAATGTGTGCTTGGAATCCTGTAGACTTGCC 258 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAAC 41103 | ||||| | || || ||||||| | ||||| | || ||| | || |||| Sbjct 257 TAAAATGGCTCTCCCTCCCTGTCATTGCCTCGTCCAGTTCTTTGTA-GCAGACGGAGAAC 199 Query 41104 TGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAG 41163 | || || || |||||||||||||| | ||||||||| || || || || || || || | Sbjct 198 TTTCGTGCCAGTTGTATCAAAGATCTGCTGACATGGGTCTTGGTGTTCCATTCAATATTG 139 Query 41164 CGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | || |||||||| || || || ||||| || || || || Sbjct 138 CAAGCTATGCTCTTCTTACATACATGATAGCTCATGTCAC 99 >seq1813012 Length=1200 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 || || || ||||| ||| |||| || | ||| || || || || |||||||| Sbjct 440 GGTTGCAAGCATGTCAAAGGAATTTTACTCTTTGGTCCTCCAGGAACAGGGAAAACATTG 381 Query 19390 ATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGT 19446 || || | || || | ||| | |||| | | | ||||| ||||||||||| || Sbjct 380 ATGGCTCGTCAAATTGGCAAAATGCTTAATGCTAGAGAACCT---AAAATTGTAAACGGA 324 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 || |||| ||| | |||||||| || |||| |||| |||||||||| | | ||||| Sbjct 323 CCACAAATTTTAGACAAATATGTGGGAGAATCAGAAGCAAATGTACGAAGACTCTTTGCA 264 Query 19507 GACGCTGAAGAAGAACAAAAA 19527 || |||||||||||| | ||| Sbjct 263 GATGCTGAAGAAGAAGAGAAA 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388625479462915