Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Philaenus_20spumarius_20[genbank_20GCA_5F002233535.1_202017-07-25] 1,822,983 sequences; 1,248,087,067 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq922613 140 8e-28 seq1475270 102 2e-16 seq158920 89.7 1e-12 seq225474 87.8 4e-12 >seq922613 Length=1439 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| ||| | |||||||| || || || | || |||||| |||||| Sbjct 79 CAAATATTTGTGAAGACTTTGACAGGAAAGACTATTACATTAGAAGTGGAACCATCAGAC 138 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| ||||| ||||| ||||| ||||||||||| || || || Sbjct 139 ACTATCGAGAACGTCAAAGCCAAGATCCAGGATAAAGAGGGAATCCCTCCAGATCAACAG 198 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || |||||||| || ||||| | || ||| | || || || || Sbjct 199 CGTCTTATTTTTGCTGGGAAACAGCTTGAGGATGGCCGCACACTTTCTGACTACAATATC 258 Query 178104 CAAAAAG 178110 || |||| Sbjct 259 CAGAAAG 265 >seq1475270 Length=306 Score = 102 bits (112), Expect = 2e-16 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||| | || || || |||||||| ||||| || || ||||| Sbjct 252 CAAATTTTTGTGAAAACTTTGACTGGTAAGACGATCACACTCGAAGTAGAGCCTTCAGAT 193 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || || || ||||||||||| || || || || || Sbjct 192 ACTATTGAAAACGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAACAG 133 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || ||||||||||| ||||| || | || |||| | ||||| || | Sbjct 132 AGATTGATATTTGCGGGAAAACAGCTTGAAGACGGTCGTAC-CTTGTCAGATTACAATAT 74 Query 178103 CCAAAAAG 178110 || |||| Sbjct 73 TCAGAAAG 66 >seq158920 Length=526 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||||||||| || ||||| || ||||||||||| || |||||| Sbjct 99 CAAATTTTTGTGAAAACTCTCACTGGCAAAACTATAACCCTCGAGGTTGAGCCATCAGAC 40 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAA 178022 || || || || |||||| ||| || || ||||| ||| Sbjct 39 ACTATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAA 1 >seq225474 Length=4644 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| ||||| ||||| || | | ||||| ||||| |||||||| |||||||| || Sbjct 730 AGGAATTCCTCCTGACCAACAGAGGTTGATCTTTGCCGGTAAACAGCTGGAAGATGGTAG 671 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| | || || ||| | || ||||||||||| || || ||||| Sbjct 670 AACACTTTCAGACTACAACATTCAGAAAGAATCAACCCTCCACCTTGT 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175615686849702