Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2745 138 1e-27 seq26202 134 1e-26 >seq2745 Length=20976 Score = 138 bits (152), Expect = 1e-27 Identities = 485/756 (64%), Gaps = 6/756 (1%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| ||||||||||| || || ||| |||| | | ||| ||||| || | | | || Sbjct 4347 ATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCCAGCATATCCAC 4288 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||||| || || || | ||| || || || || ||||| || || Sbjct 4287 TGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCACGGATGATTTCGAT 4228 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 | || |||| ||| || | || ||||| || ||||||| ||| || || || || Sbjct 4227 GATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACAGGCAAAGTCACA 4168 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 || ||||| || || | ||| || ||||| || ||||| | |||||||| | || Sbjct 4167 GTGCAATCCTTCATCGCGAGAGATCAGCTCGTTTGAGAATGTGAGTCCGGGCATGATGCC 4108 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 ||| || | ||| || || | ||||| || ||||| || ||||| || | Sbjct 4107 ACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTGAAGAAAATGCCCTCAACAGC 4048 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCAC 17157 |||||| || || | ||||| | | | || || | | |||||| | | | | Sbjct 4047 TGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAGAGC 3988 Query 17158 CCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTT 17217 ||| || || || | ||| | || || ||| || ||||| || || | |||||| Sbjct 3987 CCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATTGAACAGGAACTCTTT 3928 Query 17218 TTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277 || || | || || ||||| || || || || |||||||| || ||| | || Sbjct 3927 CTCTTGAGGATCCCGGATGTACGTGTCAATCAGCAGACTGTACATCTCACTGTGCACATT 3868 Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA 17337 ||||||||| |||||||| || || ||| ||| || || | |||||| || ||| Sbjct 3867 CTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCGGTTATTTGCACCTCCTGACT 3808 Query 17338 GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATAT 17397 ||| || ||| | ||||| || || || || || ||| |||||||| || ||||| | Sbjct 3807 GAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGGCGAAGAAAGCCAACAC 3748 Query 17398 ATGCTTAATGAAATATTTTTC---GTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTT 17454 || |||||| | | || ||| | || | ||||| | | |||| Sbjct 3747 GTGGGAAATGAACTTCCTCTCACAATCC---TTCAGTGCATTCCAGTGATCAATATCTCG 3691 Query 17455 GGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCA 17514 ||||| |||||| || || ||||| || || | || | ||| ||||| | ||| Sbjct 3690 GGATAGATCCACCTCCTCTACCGTCCAGAAGGACGCTTCAGCTTGTTTGTACATCTCCCA 3631 Query 17515 AATATCATTGTATTGTATGGGGAATACAACATATCT 17550 || |||| ||| || || || ||||| || |||| Sbjct 3630 GATGTCATGGTACTGAATAGGAAATACCACGAATCT 3595 >seq26202 Length=13276 Score = 134 bits (148), Expect = 1e-26 Identities = 388/597 (65%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| ||||||||||| || || ||| |||| | | ||| ||||| || | | | || Sbjct 1623 ATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCCAGCATATCCAC 1564 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||||| || || || | ||| || || || || ||||| || || Sbjct 1563 TGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCGCGGATGATTTCGAT 1504 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 | || |||| ||| || | || ||||| || ||||||| ||| || || || || Sbjct 1503 GATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACAGGCAAAGTCACA 1444 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 || || || || || | ||| || ||||| || ||||| | |||||||| | || Sbjct 1443 GTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTGAGTCCGGGCATGATGCC 1384 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 ||| || | ||| || || | ||||| || |||||| || ||||| || | Sbjct 1383 ACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAGAAAATGCCCTCAACAGC 1324 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCAC 17157 |||||| || || | ||||| | | | || || | | |||||| | | | | Sbjct 1323 TGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAGAGC 1264 Query 17158 CCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTT 17217 ||| || || || | ||| | || || ||| || ||||| || || | |||||| Sbjct 1263 CCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATTGAAGAGGAACTCTTT 1204 Query 17218 TTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277 ||||| | || || ||||| || || || || |||||||| || ||| | || Sbjct 1203 CTCCTGCGGATCCCGGATGTACGTGTCAATTAGCAGACTGTACATCTCACTGTGCACATT 1144 Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA 17337 ||||||||| |||||||| || || ||| ||| || || | |||||| || ||| Sbjct 1143 CTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCTGTTATTTGCACCTCCTGACT 1084 Query 17338 GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAA 17394 ||| || ||| | ||||| || || || || || ||| ||||| || || ||||| Sbjct 1083 GAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGGCAAAGAAAGCCAA 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516854508421680