Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4578 262 5e-65 seq26202 223 4e-53 seq2745 219 5e-52 seq2952 89.7 6e-13 >seq4578 Length=10518 Score = 262 bits (290), Expect = 5e-65 Identities = 765/1160 (66%), Gaps = 31/1160 (3%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || ||||| || || | ||||| || |||| || || || || ||||| | Sbjct 6884 TACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAA 6943 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || |||||||| || | ||| || || ||||| || || ||||| || || |||| || Sbjct 6944 GGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAA 7003 Query 53269 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 ||| || | || ||||| | ||||| | |||| ||||||||||| | | Sbjct 7004 CGAATTCCTCACGCC--ATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAA 7061 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 53385 |||| ||| || || ||||| || || | | || |||| Sbjct 7062 TCCGTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGAC-ATCC 7120 Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 53445 | | ||||| ||||| ||||| ||||||||| | ||| ||||| ||||| || ||||| Sbjct 7121 TGCGTATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACC 7180 Query 53446 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATG 53504 ||| || ||||| |||||||| | || ||| || | |||| ||||| ||| ||| | | Sbjct 7181 GTAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCTTCTTCGCTGTCATAGG 7239 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | | | | ||| || || || || | || ||||| ||||| || || || || | Sbjct 7240 GCAGACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGT 7299 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | ||| |||| || | || || ||||| | ||||| || || || || || | ||| | Sbjct 7300 GCCTCATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGT 7359 Query 53625 TGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC 53681 | | || | | ||||| ||| | | || | || ||||| |||||| | ||| Sbjct 7360 TCAAATTGCGCGTAACAAT--CTTCGTC-ACTGCTTTGAGTTTCTCAAAATCGTAC-GTC 7415 Query 53682 ----CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737 || | |||| ||||| || | ||||||||||||||||| || || || | |||| Sbjct 7416 TTATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCA 7475 Query 53738 T--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 53795 | | | | || ||||| || || || ||||| | ||| ||||| || || || | Sbjct 7476 TCCTTGGA--CGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAA 7533 Query 53796 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAG 53855 ||| || ||||| ||||| |||| |||||||| || || | ||| | ||||| |||| Sbjct 7534 TATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAG 7593 Query 53856 TTTCAATCTGGGATTCT--ATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT 53913 |||| | || || ||| || || || ||||| | | || ||| | | Sbjct 7594 TTTCCA-CT-TGACTCTGAATTATGGCAAACCAGAGATCTCTCGCAGGAATTCTCCTGAT 7651 Query 53914 GTATCTCTTTTCTCTTTCGTATAGTGTATACAA-TCGTTCAAACTCGTCTCCCCAAACAT 53972 || || ||| | || || | ||||| || || || || || ||||| || Sbjct 7652 ATACCTACCTTCCTTCTCATACTTCATGTACAATTCATTGAATTTC-TCACCCCAGCAAT 7710 Query 53973 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 54032 |||||| |||| | || |||||||||||| ||| || || || || |||| Sbjct 7711 CAAACAATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTC 7770 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCC 54091 | |||||| ||||| || ||||| ||||| ||| || ||||| || | || | | Sbjct 7771 TCTGCATAAACAGATCCGGGATCCACAGAGC-ATAGAACAGATCCCTTGCTCGTGCCTTC 7829 Query 54092 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151 || || || |||||||| || ||||| | ||| | | || ||| ||||| || ||| Sbjct 7830 TCCTTGCCCGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCC 7889 Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211 | ||| || | | | || || || ||||| || |||||||| | ||| | || || Sbjct 7890 AGGTAGATAGCAAAGGCACCGGGACGCTTGTTCCCACCCTGATCAACGTAGCAGGCTGTT 7949 Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271 | || || || | | |||||| | || |||||||| | |||||||| |||| ||| Sbjct 7950 GTGTTGTAGACACGAAGCATTGGGACAAGGCCATTGGAGGTGCCATTGGTGCCGGCAATA 8009 Query 54272 TAGCTTCCACTGGCACGAAT 54291 | || || | |||||||| Sbjct 8010 TGACTGCCCCGAGCACGAAT 8029 Score = 232 bits (256), Expect = 8e-56 Identities = 702/1069 (66%), Gaps = 29/1069 (3%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || ||||| || || | ||||| ||| |||| || || || || ||||| | Sbjct 3557 TACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAA 3616 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || |||||||| || | ||| || || ||||| || || ||||| || || |||| || Sbjct 3617 GGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAA 3676 Query 53269 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 ||| || | ||| ||||| | ||||| | ||||| ||||||||||| | | Sbjct 3677 CGAATTCCTCACACC--ATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAA 3734 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 53385 |||| ||| || || ||||| || || | | || |||| Sbjct 3735 TCCGTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGAC-ATCC 3793 Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 53445 | | || || ||||| ||||| ||||||||| | ||| ||||| ||||| || ||||| Sbjct 3794 TGCGTACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACC 3853 Query 53446 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATG 53504 || || ||||| |||||||| | || ||| || | |||| || || ||||||| | | Sbjct 3854 ATAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCCTCTTCGCTATCATAGG 3912 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | | | | ||| || || || |||| || ||||| ||||| || || || || | Sbjct 3913 GCAGACGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGT 3972 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 ||||| |||| || | || || ||||| | ||||| || || || || || | ||| | Sbjct 3973 GTCTCATATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGT 4032 Query 53625 TGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC 53681 | | || | | ||||| ||| | || | || ||||| ||| || | ||| Sbjct 4033 TCAAATTGCGCGTAACAAT--CTTCGTT-ACTGCTTTGAGTTTCTCAAAGTCGTAC-GTC 4088 Query 53682 ----CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCA 53737 || | |||| ||||| || | ||||||||||||||||| || || || | |||| Sbjct 4089 TTATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCA 4148 Query 53738 T--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 53795 | | | | || ||||| || || || ||||| | ||| ||||| || || || | Sbjct 4149 TCCTTGGA--CGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAA 4206 Query 53796 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAG 53855 ||| || ||||||||||| |||| |||||||| || || | ||| | ||||| |||| Sbjct 4207 TATTCTGCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAG 4266 Query 53856 TTTCAATCTGGGATTCT--ATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT 53913 |||| | || || ||| || || || ||||| | | || ||| | | Sbjct 4267 TTTCCA-CT-TGACTCTGAATTATGGCAAACCAGAGATCCCTCGCAGGAATTCTCCTGAT 4324 Query 53914 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT 53973 || || ||| | || || | |||||| | |||| || ||||| || Sbjct 4325 ATACCTACCTTCCTTCTCATACTTCATGTACAATTCATTGAACTTCTCACCCCAGCAATC 4384 Query 53974 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 ||||| |||| | || |||||||||||| ||| || || || || |||| Sbjct 4385 AAATAATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCT 4444 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCT 54092 | |||||| ||||| || ||||| ||||| ||| || ||||| || | || | || Sbjct 4445 CTGCATAAACAGATCCGGGATCCACAGAGC-ATAGAACAGATCCCTTGCTCGTGCCTTCT 4503 Query 54093 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 | || || || ||||| || ||||| | ||| | | ||| ||| ||||| || |||| Sbjct 4504 CCTTGCCCGTGTTCTTCTTGAGATCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCCA 4563 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 54201 ||| || | | | || || || ||||| || || ||||| | ||| Sbjct 4564 GGTAGATAGCAAAGGCACCGGGACGCTTGTTCCCACCTTGATCAACGTA 4612 >seq26202 Length=13276 Score = 223 bits (246), Expect = 4e-53 Identities = 418/612 (68%), Gaps = 3/612 (0%) Strand=Plus/Minus Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 ||| || ||||||||||| || || || ||||| | ||| || || | | || | || Sbjct 1473 ATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTC 1414 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 ||| || || |||||||||||||| | |||||| ||| ||||| || || || || || Sbjct 1413 GTTCGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAA 1354 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACC 24298 ||| ||||||||| || || || || ||||||||||| | | ||| ||| | Sbjct 1353 GCTTCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTT 1294 Query 24299 GGC--GCTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 || ||| | | ||||||| |||||||||| |||||||| || ||||| |||| Sbjct 1293 AGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAG 1234 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 ||||| || ||||| ||||| | | ||| || | ||| | || || ||||| Sbjct 1233 CGTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCAAT 1174 Query 24416 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 | ||||| ||||| || || | || || ||||| || ||||| || ||||| | Sbjct 1173 TAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAA 1114 Query 24476 TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTAT 24535 ||||||||| || || || || || || || || || | | ||| ||||| || || Sbjct 1113 TCTAGCCTCTGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAAT 1054 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 24595 || || || ||||| || ||||| || || || || | | || | Sbjct 1053 CCCATCGGAAGCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTT 994 Query 24596 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 ||| |||||| | || ||||| || | ||||||||| ||||| ||||| || || Sbjct 993 CAGTGCATTCCAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGA 934 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || || | ||| ||||| | |||||||||||| || ||||| ||||| | || || Sbjct 933 CGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAA 874 Query 24716 TCTATTTGGATT 24727 ||| | ||||| Sbjct 873 TCTCCTGGGATT 862 >seq2745 Length=20976 Score = 219 bits (242), Expect = 5e-52 Identities = 417/612 (68%), Gaps = 3/612 (0%) Strand=Plus/Minus Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 ||| || ||||||||||| || || || ||||| | || || || | | || | || Sbjct 4197 ATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTC 4138 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 ||| || || |||||||||||||| | |||||| ||| ||||| || || || || || Sbjct 4137 GTTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAA 4078 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACC 24298 ||| |||||||| || || || || ||||||||||| | | ||| ||| | Sbjct 4077 GCTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTT 4018 Query 24299 GGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 || ||| | | | |||||| |||||||||| |||||||| || ||||| |||| Sbjct 4017 AGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAG 3958 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 ||||| || ||||| || || | | ||| || | | ||| | || || ||||| Sbjct 3957 CGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAAT 3898 Query 24416 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 || ||||| ||||| || || | || || ||||| || ||||| || ||||| | Sbjct 3897 CAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAA 3838 Query 24476 TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTAT 24535 |||||||||||| || || || || || || || || | | ||| ||||| || || Sbjct 3837 TCTAGCCTCGGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAAT 3778 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 24595 || || || || || || ||||| || || || || | | || | Sbjct 3777 CCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCTT 3718 Query 24596 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 ||| |||||| | || |||||| |||| |||||| || || || ||||| || || Sbjct 3717 CAGTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGA 3658 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || || | ||| ||||| | |||||||||||| || ||||| ||||| | || || Sbjct 3657 CGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGAA 3598 Query 24716 TCTATTTGGATT 24727 ||| | ||||| Sbjct 3597 TCTCCTGGGATT 3586 >seq2952 Length=20052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||||||||||| | | || || ||||| || || || ||||||||||| Sbjct 6241 TTGTCCACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCCG 6300 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| || || | |||| |||| || || || || |||||| ||| | || Sbjct 6301 GTTTTCAGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGGT 6360 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 ||||| | | || || | || ||||| || || || |||||||| | ||| || ||| Sbjct 6361 TCTGCCACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCC 6420 Query 52979 ATTTTTATGATCGTCTT 52995 || | || || ||||| Sbjct 6421 ATCTCGATCATGGTCTT 6437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592928788704480