Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq26202 383 2e-101 seq2745 367 1e-96 seq186 132 5e-26 seq18 118 1e-21 seq83690 102 8e-17 >seq26202 Length=13276 Score = 383 bits (424), Expect = 2e-101 Identities = 567/794 (71%), Gaps = 12/794 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||| | ||||| ||| | | |||||| | || || || || |||| ||| Sbjct 844 GAGCCCTTGCTCAGGGAGAATCCCAGGAGATTCGTGGTATTTCCTATTCAGTACCATGAC 903 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||||||||| | || || ||||| |||||||| || ||||| ||||| ||| Sbjct 904 ATCTGGGAGATGTACAAACAAGCTGAAGCGTCCTTCTGGACGGTGGAGGAAGTGGATCTG 963 Query 116696 TCCAAGGACAC-GAGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 ||| ||| | || | ||||| | || || ||| || ||| | | ||||| | Sbjct 964 TCCCGGGATATTGATC-ACTGGAATGCACT-GAAGGATTGTGAGAGGAAGTTCATTTCCC 1021 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 ||||| |||| || || ||||| ||| || || ||||| ||||||||||| ||||| | Sbjct 1022 ACGTGTTGGCTTTCTTTGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCT 1081 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 || |||||||||||| | | ||||| | | |||||| ||||||||||| ||||||| Sbjct 1082 TCAGTCAGGAGGTGCAAATAACAGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGG 1141 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933 |||| |||||| || ||||| || || ||||||||| | || | || ||| Sbjct 1142 AGAATGTGCACAGTGAGATGTACAGTCTGCTAATTGACACGTACATCCGGGATCCGCAGG 1201 Query 116934 AGAA---GCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 |||| | ||| | || || ||||| |||||| |||| || ||||| ||||||| | Sbjct 1202 AGAAAGAGTTCC---TCTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAAGAAGGCAG 1258 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 | ||||| |||| ||||| ||| | ||| || || ||| || || || || | ||| Sbjct 1259 ATTGGGCTCTGCAGTGGATTGCCAGTCAG-GAAGCTAACTTTGGGGAACGTGTGATTGCC 1317 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || || || |||||| | |||||| || || ||||| | || || |||||||| Sbjct 1318 TTTGCAGCTGTTGAGGGCATTTTCTTTAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAAA 1377 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 ||| ||| |||||||||| || || ||| |||||||| ||||| | || || ||| Sbjct 1378 TCACGTGGCATCATGCCCGGACTCACATTCTCGAACGAGCTGATCTCTCGCGATGAAGGT 1437 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 |||| || ||||||||||||||| ||||||||||| |||||||| || | || | Sbjct 1438 TTGCACTGTGACTTTGCCTGTTTGATGTTCAAGCATCTGGTGCAGAAGCCCTCCAAGGAG 1497 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 ||| ||| || ||| || ||| || || | || || ||| |||||||| || || Sbjct 1498 CGCATCATCGAAATCATCCGCGAAGCTGTGACAATTGAACAGGAATTCCTCACTGATGCC 1557 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 || || ||| | ||||||| | |||||| | ||||| || ||||| || || || Sbjct 1558 CTTCCAGTGGATATGCTGGGCATGAATTGCCAGCTCATGTCCCAGTACATTGAATTTGTA 1617 Query 117350 GCCGACAGGCTGCT 117363 ||||| |||| || Sbjct 1618 GCCGATCGGCTACT 1631 >seq2745 Length=20976 Score = 367 bits (406), Expect = 1e-96 Identities = 558/785 (71%), Gaps = 12/785 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||| | ||||| ||| | | |||||| | || || || || |||| ||| Sbjct 3568 GAGCCCTTGCTCAGGGAGAATCCCAGGAGATTCGTGGTATTTCCTATTCAGTACCATGAC 3627 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||||||||| | || || ||||| |||||||| || ||||||||||| || Sbjct 3628 ATCTGGGAGATGTACAAACAAGCTGAAGCGTCCTTCTGGACGGTAGAGGAGGTGGATCTA 3687 Query 116696 TCCAAGGACAC-GAGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 ||| || | || | ||||| | || || ||| || ||| | | ||||| | Sbjct 3688 TCCCGAGATATTGATC-ACTGGAATGCACT-GAAGGATTGTGAGAGGAAGTTCATTTCCC 3745 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTT 116813 ||||| |||| || |||||||| ||| || || ||||| ||||||||||| ||||| | Sbjct 3746 ACGTGTTGGCTTTCTTCGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCT 3805 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 || |||||||||||| | ||||||| | | |||||| ||||||||||| ||||||| Sbjct 3806 TCAGTCAGGAGGTGCAAATAACCGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGG 3865 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGG 116933 |||| |||||| || ||||| || || ||||||||| | || | | | | Sbjct 3866 AGAATGTGCACAGTGAGATGTACAGTCTGCTGATTGACACGTACATCCGGGATCCTCAAG 3925 Query 116934 AGAA---GCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 |||| | ||| |||| || ||||| |||||| |||| || ||||| ||||||| | Sbjct 3926 AGAAAGAGTTCC---TGTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAAGAAGGCAG 3982 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGG-CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 | ||||| |||| ||||| ||| | ||| || || ||| || || || || | ||| Sbjct 3983 ATTGGGCTCTGCAGTGGATTGCCAGTCAG-GAAGCTAACTTTGGGGAACGTGTGATTGCC 4041 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || || || |||||| | ||||| || || ||||| | || || |||||||| Sbjct 4042 TTTGCAGCTGTTGAGGGCATTTTCTTCAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAAA 4101 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 ||| ||| |||||||||| || || ||| |||||||| ||||| | || || || Sbjct 4102 TCACGTGGCATCATGCCCGGACTCACATTCTCAAACGAGCTGATCTCTCGCGATGAAGGA 4161 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 |||| || ||||||||||||||| ||||||||||| |||||||| || | || | Sbjct 4162 TTGCACTGTGACTTTGCCTGTTTGATGTTCAAGCATCTGGTGCAGAAGCCCTCCAAGGAG 4221 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 ||| ||| || ||| || || || || | || || ||| |||||||| || || Sbjct 4222 CGCATCATCGAAATCATCCGTGAAGCTGTGACAATTGAACAGGAATTCCTCACTGATGCC 4281 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 || || ||| | ||||||| | |||||| | ||||| || ||||| || || || Sbjct 4282 CTTCCAGTGGATATGCTGGGCATGAATTGCCAGCTCATGTCCCAGTACATTGAATTTGTA 4341 Query 117350 GCCGA 117354 ||||| Sbjct 4342 GCCGA 4346 >seq186 Length=148488 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || || || || ||||||||| | || || ||| | | Sbjct 13171 AATGCAAATTTTTGTCAAAACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAACCATC 13230 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | || || ||||| |||||| | ||||| Sbjct 13231 TGACACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCA 13290 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| ||||| ||||| || || | |||||| | ||||||||| Sbjct 13291 GCAACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGTCCGACTACAA 13350 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || ||| | || || || Sbjct 13351 CATCCAGAAGGAGTCTACCCTTCATTTGGTCTTACG 13386 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||| || |||| || || || | Sbjct 13626 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCT 13685 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| || || ||||| | || || Sbjct 13686 GACACTATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 13744 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || |||||| |||| || | || || ||| |||||||| Sbjct 13745 GCAGCGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAA 13804 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || || || ||||| || | || || ||| Sbjct 13805 CATCCAGAAGGAGTCAACCCTTCACCTTGTGTTACGTCTCAGAGGTGGC 13853 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || || || |||||||| | || ||||| || | Sbjct 12943 AATGCAGATCTTTGTGAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGCCCTC 13002 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | || || | | |||| || |||| || || |||||||| ||| | |||| Sbjct 13003 TGATACGATTGAGAATG-TGAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACC 13061 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || || | || ||||| || || || || | || ||||| ||||||| Sbjct 13062 AGCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTTTCTGACTACA 13121 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| ||||||||| | || || ||||| || ||||| Sbjct 13122 ACATTCAGAAGGAGTCTACCCTCCATCTTGTCTTGCG 13158 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || || || || | || || ||| | | Sbjct 13854 ATGCAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCT 13913 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||| | || |||| || ||||| || || || | |||||| Sbjct 13914 GATACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 13973 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || || ||||| || || || | || ||||| ||||||||| Sbjct 13974 CAACGTTTGATTTTTGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCGGACTACAAC 14033 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| | || || ||||| ||| |||| Sbjct 14034 ATCCAGAAGGAATCAACCCTTCATCTTGTGCTGCG 14068 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||| ||| | || |||||| | | Sbjct 13400 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACCATTACCCTTGAGGTCGAACCTTCT 13459 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||||| | |||| ||| ||| || || ||||| ||||| ||||||| Sbjct 13460 GATACTATTGAAACG-TGAAGGCCAAA-TTCAGGATAAGGAGGGGATCCCACCGGACCAA 13517 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || || || || || | || ||||| |||||||| Sbjct 13518 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGATGGTCGTACCCTGTCTGACTACAAT 13577 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 13578 ATCCAGAAGGAGTCTACCCTCCATCTTGT 13606 >seq18 Length=974545 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || ||||| |||||||||||| | || || ||| || Sbjct 449444 AAAATGCAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAACCC 449503 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| | || | ||| |||| ||||| ||||| || || |||| Sbjct 449504 TCAGATACCATTGAAAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGAT 449563 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| || || || ||||| || || | || || || || ||| Sbjct 449564 CAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGGATTAC 449623 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||||||| ||| |||||||| |||||||| Sbjct 449624 AATATCCAGAAGGAGAGCACCCTGCATCTCGTGTTGCG 449661 >seq83690 Length=433 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || |||||| | || Sbjct 26 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCC 85 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||||| || || | ||||| || || ||||| | ||||| Sbjct 86 GATACTATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 144 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || || |||| || | || || || |||||||| Sbjct 145 GCAGCGTCTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACTCTTTCGGACTACAA 204 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || ||||| |||| || ||||| || Sbjct 205 CATTCAAAAGGAATCCACTCTCCATCTTGT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514531214921760