Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq186 116 3e-21 seq18 113 4e-20 >seq186 Length=148488 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| || | |||||||| || || |||||||| ||| || ||||| |||| Sbjct 13383 AAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCC 13324 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 |||||||| || |||||| | |||||||| ||||| || || || || |||||||| ||| Sbjct 13323 TCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCT 13264 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| | || | || || || | ||| | || Sbjct 13263 TGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGT-TCAACTTCAAGGGTGATGGT 13205 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || ||||| |||||||| ||||| Sbjct 13204 CTTTCCGGTAAGGGTTTTGACAAAAATTTGCAT 13172 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| |||||||| || ||||||||||| || | || || ||| || | Sbjct 13151 CAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATCTTCAA 13092 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || || ||||| | || ||||||||||| || || || ||||||||||| || || Sbjct 13091 GTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAA 13032 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | || || | | ||||||||| | || | || || | Sbjct 13031 TCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATGGTCTTAC 12972 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| || ||||| |||||||| Sbjct 12971 CGGTCAAAGTCTTCACAAAGATCTGCAT 12944 >seq18 Length=974545 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || || |||||||| || || || |||||| ||||| ||||| || | Sbjct 449638 CTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAA 449579 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| | |||||||||||| ||||| || ||||||||||| ||| ||| ||| || | Sbjct 449578 GATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 449519 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 ||| | ||| || | | || ||||| | ||| | ||||| || || ||||| || || Sbjct 449518 TTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCAC 449459 Query 118727 AAAAATCTGCAT 118738 ||| |||||||| Sbjct 449458 AAAGATCTGCAT 449447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433265578035592