Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq18 131 2e-25 seq2580 107 2e-18 seq742 107 2e-18 seq1401 104 3e-17 seq83690 96.9 4e-15 seq186 84.2 2e-11 >seq18 Length=974545 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | ||||| ||||||||||| || ||||||||||| | ||| || || | Sbjct 449662 ACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGGCC 449603 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || | |||||||| || | || | | |||||| Sbjct 449602 ATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTT 449543 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | |||| ||| | | | | || || | |||||| || | |||| Sbjct 449542 GTCC-TGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGA 449484 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCGAA 43195 ||||||| ||||| || ||||| |||||||| |||||||| | || ||| Sbjct 449483 TGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTTGAAGCTGAA 449435 >seq2580 Length=21258 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1123 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1064 Query 60117 TCACCACTATACTACCGAGGA-TTGA 60141 | ||||||||||||||||||| |||| Sbjct 1063 TGACCACTATACTACCGAGGACTTGA 1038 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1466 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1407 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 1406 TACTACCGAGGA 1395 >seq742 Length=55996 Score = 107 bits (118), Expect = 2e-18 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 43692 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 43633 Query 60126 TACTACCGAGGA-TTGAAT 60143 |||||||||||| |||||| Sbjct 43632 TACTACCGAGGACTTGAAT 43614 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 44609 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 44550 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 44549 TGACCACTATACTACCGAGGA 44529 >seq1401 Length=35896 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 4005 AAAAATGATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3946 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 3945 CTGACCACTATACTACCGAGGA 3924 >seq83690 Length=433 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || | ||||| || | || || | ||||| |||||||| Sbjct 216 TCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAG 157 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | | ||||||||| ||| || |||| || Sbjct 156 ATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 97 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || ||| | ||| || || | |||||||| ||||| || || ||||| ||| Sbjct 96 TCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACA 37 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 36 AAGATCTGCAT 26 >seq186 Length=148488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | ||| | || |||||| ||||| ||||| |||| || || || | Sbjct 13159 ACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACC 13100 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| ||||| || || || ||||||||||| | || | || |||||| Sbjct 13099 ATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTT 13040 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | || | || | || | | ||| || | || || || | |||| Sbjct 13039 ATCC-TGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGA 12981 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || || || | ||||| |||||||| |||||| Sbjct 12980 TGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATT 12943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571054037663280