Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq186 105 4e-18 seq83690 104 2e-17 seq18 102 5e-17 >seq186 Length=148488 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | |||||||| || ||| Sbjct 13134 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAA 13075 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| ||| | || |||||| || ||||| ||| | || Sbjct 13074 ATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTC 13015 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| ||| | | ||||| || | |||||||| || ||||| | ||| |||||| Sbjct 13014 TCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACA 12955 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 12954 AAGATCTGCAT 12944 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| |||||||||||||||| | || || | || || | ||||||||| ||||| Sbjct 13362 TCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGACCATCCTCGAGCTGCTTGCCAGCGAA 13304 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 |||||| || |||||||| ||| | | |||||| || ||||| ||| | || Sbjct 13303 AATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATT 13244 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| || ||||| || ||||| || Sbjct 13243 CTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGTCTTTCCGGTAAGGGTTTTGAC 13184 Query 34378 AAAGATCTGCAT 34389 ||| || ||||| Sbjct 13183 AAAAATTTGCAT 13172 >seq83690 Length=433 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || ||||||||||| || || |||| | || ||||| ||||| || ||||| Sbjct 217 TTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAA 158 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| || | | |||||||| ||||| ||| | | Sbjct 157 GATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 98 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||||| | |||||| || | |||||||| ||||| ||||| || || || Sbjct 97 CTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 38 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 37 AAAGATCTGCAT 26 >seq18 Length=974545 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||| || || | || || || ||||| || ||||| || ||| Sbjct 449673 CCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGAC 449614 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | |||||| || || || || | |||||||| || || Sbjct 449613 AGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGA 449554 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||||| | || | || | ||| | | ||| || Sbjct 449553 ATTCCCTCCTTGTCCTGAATCTTT-GCTTTCACATTTTCAATGGTATCTGAGGGTTCCAC 449495 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || ||||| ||||||||||||||||| Sbjct 449494 CTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCAT 449447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322651379034560