Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2745 167 2e-36 >seq2745 Length=20976 Score = 167 bits (184), Expect = 2e-36 Identities = 399/598 (67%), Gaps = 4/598 (1%) Strand=Plus/Minus Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 || || ||||| | ||| ||||| ||||| ||||||||||| || | | || | |||| Sbjct 4196 TGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTCG 4137 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 ||||| ||||| || || ||||| | || ||| ||| | ||| || || | || || Sbjct 4136 TTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAAG 4077 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399 || ||||| || || ||||| || ||||| |||| || || || || | ||| Sbjct 4076 CTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTC-CCCAAAGTT 4018 Query 16400 CTAtt-tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCAT 16458 || | ||| | ||||| | |||||||| ||| || | || |||||| || Sbjct 4017 AGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAG 3958 Query 16459 GTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTAT 16518 |||| || ||||| || | | | ||| |||| ||| || || || || || Sbjct 3957 CGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAAT 3898 Query 16519 TAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 || | ||| ||||| || || | ||||||||| || |||||||| ||||| ||| | Sbjct 3897 CAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAA 3838 Query 16579 TCTAGCTTCGGATATTTGTA-CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTA 16637 |||||| |||| |||||| | || | || | || | || | | || || || || | Sbjct 3837 TCTAGCCTCGGTTATTTGCACCTCCTGACT-GAAGCGCTCCACCAGATTCTCATTGACAA 3779 Query 16638 TTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG 16697 | |||||| ||| || || || || | | ||| ||| || || | || ||| Sbjct 3778 TCCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATCCT 3719 Query 16698 AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAG 16757 ||| ||||| | || |||| |||| ||| ||||| ||||| ||||| || | Sbjct 3718 TCAGTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGG 3659 Query 16758 AAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAAC 16815 | || |||| | ||| ||||| | ||| ||||| | ||| ||||||||| || || Sbjct 3658 ACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCAC 3601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461894396163600