Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7333 176 9e-39 seq26202 138 2e-27 seq2745 134 3e-26 >seq7333 Length=2231 Score = 176 bits (194), Expect = 9e-39 Identities = 464/693 (67%), Gaps = 19/693 (3%) Strand=Plus/Plus Query 35096 GAACATCAATATTTGAACCT-AGTCAGGGAGATCCTAGAAAGAGGAGTGAAGAAGGACGA 35154 ||| |||| |||||| | || | |||| || ||| | || | || ||||||| || || Sbjct 855 GAAGATCAGTATTTGCAGCTGATTCAGCGA-ATCATCGATACGGGCGTGAAGAGAGATGA 913 Query 35155 TAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGA 35214 | |||| || ||| ||||| || || |||||| | |||||| | ||| ||||| | Sbjct 914 TCGAACAGGTGTAGGTACTCTTTCAATCTTTGGAGCACAAATGCGCTTCGACCTTCGCAA 973 Query 35215 CGACACTATTCCAGTTC-TCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAAC 35273 || | |||| | || | || ||||||| | | || ||| |||| || | || ||| Sbjct 974 TGATG-TCTTCCCGCTCCTGACCACCAAGAGAGTGTTTTGGCGAGGTGTAGCTGAGGAAT 1032 Query 35274 TCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACA 35333 | |||||||||||||| || ||||| || |||||| ||||||| || | Sbjct 1033 TGATCTGGTTCATCAGGGGTTCAACTGACGCAAAGGAATTGCAGCAGAAGAACATTGGGA 1092 Query 35334 TCTGGAACGCTAATGGGTCGCGGGAATTTTTGGA--CAGTAGAGGGTTATACG-ATAGAG 35390 ||||||| | || | | |||| || |||| || | ||| | ||| | ||| Sbjct 1093 TCTGGAATGGGAACAGTACAAGGGAGTTCCTGGATTCAAT---GGGATTCACGGAGCGAG 1149 Query 35391 CAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATG 35450 ||||| |||||||| || || || || || || |||||||| ||||| || |||| Sbjct 1150 AGGAGGGTGATTTGGGGCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGAGCCCCCTATG 1209 Query 35451 ATACCTGTTCTTCCGATTA-TAC--TGGAAAGGGTATTGATCAATTGGCCAATATACTAA 35507 || ||| ||| | ||| |||| |||| | ||||| || | | | Sbjct 1210 GCACATGTAAG---GATAACTACGTTGGACAGGGCGTGGATCAGCTGAAGGAGGTGATTC 1266 Query 35508 AGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGG 35567 || | | | || || ||| ||||| | |||| || |||| |||||||||||| ||| Sbjct 1267 AGCGCATCCGGGAGAAGCCAAATGATCGGCGGATTATCATGAGCGCATGGAATCCTGTGG 1326 Query 35568 ATCTTCACCTTATGGCTCT-TCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAA 35625 || | | | | ||||| || || || || ||| || || | || ||||| ||||| || Sbjct 1327 ATTTACCCATAATGGCACTACCCACCCTGTCAC-TGCCTCGTGCAGTTTTACGTGGCCAA 1385 Query 35626 TGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTT 35685 ||| ||| | || |||||| ||||||| ||| | |||| | || ||||| || || || Sbjct 1386 TGGGGAACTCTCCTGCCAGATGTATCAACGATCGGCAGATATGGGCTTGGGTGTTCCATT 1445 Query 35686 CAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACC 35745 ||| ||||| ||| | ||||| |||| | || ||| || | ||| || || Sbjct 1446 CAACATTGCCAGCTACGCCCTTCTCACTCGAATCATCGCCCACATAACTGATCTCAAGCC 1505 Query 35746 GGGAGAGTTTATCCTCACTCTTGGTGACGCACA 35778 || || ||| ||| |||||| || || || || Sbjct 1506 TGGGGATTTTGTCCACACTCTGGGAGATGCTCA 1538 >seq26202 Length=13276 Score = 138 bits (152), Expect = 2e-27 Identities = 288/417 (69%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 101853 TCAAGAAGAAGGAGCAGTGGGCTATTAATTGGAT-GCAA---AGCAA--TAACGATTTGG 101906 |||||||||||| | |||||| | | ||||| || | || || |||| ||||| Sbjct 1244 TCAAGAAGAAGGCAGATTGGGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAAC--TTTGG 1301 Query 101907 CGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCAT 101966 ||||| | |||||||||| || ||||| || || |||||||| || ||||| | Sbjct 1302 -GGAACGTGTGATTGCCTTTGCAGCTGTTGAGGGCATTTTCTTTAGCGGAAGCTTCGCTT 1360 Query 101967 CCATTTTCTGGATCAAGAACAGG-GGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 | || |||||| |||| | || | || || |||| || ||||| | ||| || ||| | Sbjct 1361 CAATCTTCTGGCTCAA-ATCACGTGGCATCATGCCCGGACTCACATTCTCGAACGAGCTG 1419 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTT 102085 || ||| | || |||||| | || | |||||||| || || |||| || | | | Sbjct 1420 ATCTCTCGCGATGAAGGTTTGCACTGTGACTTTGCCTGTTTGATGTTCAAGCATC-TGGT 1478 Query 102086 GTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAA 102145 | || | ||| |||| || | || | ||||| || ||||| || ||||||| Sbjct 1479 GCAGA-AGCCCTCCAAG-GAGCGCATCATCGAAATCATCCGCGAAGCTGTGACAATTGAA 1536 Query 102146 CAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATG 102205 || ||||| ||||| | | |||| || || | | |||| ||||| ||| || | ||| Sbjct 1537 CAGGAATTCCTCACTGATGCCCTTCCAGTGGATATGCTGGGCATGAATTGCCAGCTCATG 1596 Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAG 102262 |||||||||||||||||| || ||| ||| | || ||| | ||| | || ||| Sbjct 1597 TCCCAGTACATTGAATTTGTAGCCGATCGGCTACTTGTGGAACTCGGAGTTGACAAG 1653 >seq2745 Length=20976 Score = 134 bits (148), Expect = 3e-26 Identities = 287/417 (69%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 101853 TCAAGAAGAAGGAGCAGTGGGCTATTAATTGGAT-GCAA---AGCAA--TAACGATTTGG 101906 |||||||||||| | |||||| | | ||||| || | || || |||| ||||| Sbjct 3968 TCAAGAAGAAGGCAGATTGGGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAAC--TTTGG 4025 Query 101907 CGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCAT 101966 ||||| | |||||||||| || ||||| || || ||||| || || ||||| | Sbjct 4026 -GGAACGTGTGATTGCCTTTGCAGCTGTTGAGGGCATTTTCTTCAGCGGAAGCTTCGCTT 4084 Query 101967 CCATTTTCTGGATCAAGAACAGG-GGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 | || |||||| |||| | || | || || |||| || ||||| | ||| || ||| | Sbjct 4085 CAATCTTCTGGCTCAA-ATCACGTGGCATCATGCCCGGACTCACATTCTCAAACGAGCTG 4143 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTT 102085 || ||| | || ||||| | || | |||||||| || || |||| || | | | Sbjct 4144 ATCTCTCGCGATGAAGGATTGCACTGTGACTTTGCCTGTTTGATGTTCAAGCATC-TGGT 4202 Query 102086 GTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAA 102145 | || | ||| |||| || | || | ||||| || |||||| || ||||||| Sbjct 4203 GCAGA-AGCCCTCCAAG-GAGCGCATCATCGAAATCATCCGTGAAGCTGTGACAATTGAA 4260 Query 102146 CAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATG 102205 || ||||| ||||| | | |||| || || | | |||| ||||| ||| || | ||| Sbjct 4261 CAGGAATTCCTCACTGATGCCCTTCCAGTGGATATGCTGGGCATGAATTGCCAGCTCATG 4320 Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAG 102262 |||||||||||||||||| || ||| ||| | || ||| | ||| | || ||| Sbjct 4321 TCCCAGTACATTGAATTTGTAGCCGATCGTCTACTTGTGGAACTCGGAGTTGACAAG 4377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988229548338830