Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4578 152 5e-32 seq26202 150 2e-31 seq2745 147 2e-30 >seq4578 Length=10518 Score = 152 bits (168), Expect = 5e-32 Identities = 479/730 (66%), Gaps = 23/730 (3%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || || || | ||||| | | || || ||| || || ||||| | | Sbjct 6885 ACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAAG 6944 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | || || || | || || || || |||||||| || | || | Sbjct 6945 GATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAAC 7004 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 ||| |||| |||||| |||| | |||| |||| ||||| ||| ||||| Sbjct 7005 GAATTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAATCC 7064 Query 37318 GTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 ||||| |||||| |||||| || || || || ||||| || ||| ||||| | | Sbjct 7065 GTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTGCG 7124 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 |||||||| || ||||| | | ||| | ||||||||| | || | || | || Sbjct 7125 TATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGTAG 7184 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC-GAATGCATA 37496 || || || ||||| ||||| ||| | | | || ||||||||||| || | ||| | Sbjct 7185 TAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTCTTCGCTGTCATAGGGCAGA 7244 Query 37497 GCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTT 37556 | || || || || |||| |||| ||||||||| || || || || || || || | Sbjct 7245 -CGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCCT 7303 Query 37557 CTTATTAG---ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATT 37613 | |||| | || | | | ||| || ||||| || ||||| || || | ||| || Sbjct 7304 CATATTGGACAATTTGGCC---TCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTT 7360 Query 37614 TAGATT---TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACG-- 37668 | ||| |||| || ||||| | | | | | || || || || |||| Sbjct 7361 CAAATTGCGCGTAAC---AATCTTCGTCACTGCTTTGAGTTTCTC-AAAAT-CGTACGTC 7415 Query 37669 TTATTA---TTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCA 37725 |||| | || || || || | | | ||||||| | ||||| || ||||||| ||| Sbjct 7416 TTATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCA 7475 Query 37726 TCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAA 37784 || | | || || ||| || ||| ||||| || | ||| || | | |||||| || | Sbjct 7476 TCCTTG-GACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAAT 7534 Query 37785 ATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTG 37844 ||| |||||| || | || || | |||||| || | || |||||||| || Sbjct 7535 ATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGT 7594 Query 37845 TTCTATTTGA 37854 ||| | |||| Sbjct 7595 TTCCACTTGA 7604 Score = 147 bits (162), Expect = 2e-30 Identities = 477/730 (65%), Gaps = 23/730 (3%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || || || | ||||| | | || || ||| || || ||||| | | Sbjct 3558 ACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAAG 3617 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | || || || | || || || || |||||||| || | || | Sbjct 3618 GATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAAC 3677 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 ||| |||| |||||| |||| | ||||| |||| ||||| ||| ||||| Sbjct 3678 GAATTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAATCC 3737 Query 37318 GTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 ||||| ||||| |||||| || || || || ||||| || ||| ||||| | | Sbjct 3738 GTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTGCG 3797 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 || ||||| || ||||| | | ||| | ||||||||| | || | || |||| Sbjct 3798 TACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCATAG 3857 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC-GAATGCATA 37496 || || || ||||| ||||| ||| | | | || || ||||||||||| | ||| | Sbjct 3858 TAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCCTCTTCGCTATCATAGGGCAGA 3917 Query 37497 GCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTT 37556 | || || || || |||| || | ||||||||| || || || || || || ||| | Sbjct 3918 -CGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTCT 3976 Query 37557 CTTATTAG---ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATT 37613 | |||| | || | | | ||| ||| ||||| || ||||| || || | ||| || Sbjct 3977 CATATTGGACAATTTGGCC---TCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTT 4033 Query 37614 TAGATT---TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACG 37668 | ||| |||| || ||||| | | | | | || || || | || | Sbjct 4034 CAAATTGCGCGTAAC---AATCTTCGTTACTGCTTTGAGTTTCTCAAAGTCGTACGT--C 4088 Query 37669 TTATTA---TTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCA 37725 |||| | || || || || | | | ||||||| | ||||| || ||||||| ||| Sbjct 4089 TTATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCA 4148 Query 37726 TCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAA 37784 || | | || || ||| || ||| ||||| || | ||| || | | |||||| || | Sbjct 4149 TCCTTG-GACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAAT 4207 Query 37785 ATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTG 37844 ||| ||||| || | || || | |||||| || | || |||||||| || Sbjct 4208 ATTCTGCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGT 4267 Query 37845 TTCTATTTGA 37854 ||| | |||| Sbjct 4268 TTCCACTTGA 4277 >seq26202 Length=13276 Score = 150 bits (166), Expect = 2e-31 Identities = 493/760 (65%), Gaps = 17/760 (2%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||| || ||||| ||||| | |||||||| || | | |||||| Sbjct 1623 ATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCCAGCATATCCAC 1564 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTATCGA 11580 |||| ||| | || | || |||| ||| || | || || || |||||| |||| Sbjct 1563 TGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCGCGGATGATT-TCGA 1505 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 | || ||||| || || || | | ||| || ||||| ||||| ||||| || Sbjct 1504 TG--ATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACAGGCAAAGTC 1447 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 ||| || |||||||| || | | || || || || || ||||| | ||||||||| | Sbjct 1446 ACAGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTGAGTCCGGGCATGAT 1387 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 || ||| ||| | ||| || || | ||| || || |||||| || ||||| || Sbjct 1386 GCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAGAAAATGCCCTCAAC 1327 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTG-CTAGATATCCATTTTCT 11817 ||||||||| || | || | ||| ||| | || ||| || || | ||||| | Sbjct 1326 AGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAG 1267 Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877 |||||||| || ||||| || || || || || || || || || || | | Sbjct 1266 AGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATTGAAGAGGAACTC 1207 Query 11878 TTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAAT 11937 ||| || ||| | | || || || |||| | ||| ||||| || || | Sbjct 1206 TTTCTCCTGCGGATCCCGGATGTACGTGTCAATTAGCAGACTGTACATCTCACTGTGCAC 1147 Query 11938 ATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCAC 11997 ||| ||||| || || ||||| |||||||| ||| ||||||| || || ||| Sbjct 1146 ATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCTGTTATTTGCACCTCCTG 1087 Query 11998 ATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | || | ||| | | ||||||||| ||||| ||||| || ||||| || || | Sbjct 1086 ACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGGCAAAGAAAGCCAA 1027 Query 12058 TATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 | || || || | | || ||| ||| ||| ||| | ||| | || Sbjct 1026 CACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATT----CCAGTGATCAATAT 971 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTT 12173 | || | ||| ||||| || || ||||| || || | | |||||| ||||| | Sbjct 970 CCCGGGACAGATCCACTTCCTCCACCGTCCAGAAGGACGCTTCAGCTTGTTTGTACATCT 911 Query 12174 TCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||||| ||||| |||| |||||| || | ||||| || Sbjct 910 CCCAGATGTCATGGTACTGAATAGGAAATACCACGAATCT 871 >seq2745 Length=20976 Score = 147 bits (162), Expect = 2e-30 Identities = 492/760 (65%), Gaps = 17/760 (2%) Strand=Plus/Minus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||| || ||||| ||||| | |||||||| || | | |||||| Sbjct 4347 ATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCCAGCATATCCAC 4288 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTATCGA 11580 |||| ||| | || | || |||| ||| || | || || ||| |||||| |||| Sbjct 4287 TGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCACGGATGATT-TCGA 4229 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 | || ||||| || || || | | ||| || ||||| ||||| ||||| || Sbjct 4228 TG--ATGCGCTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACAGGCAAAGTC 4171 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 ||| || || ||||| || | | || || || || || ||||| | ||||||||| | Sbjct 4170 ACAGTGCAATCCTTCATCGCGAGAGATCAGCTCGTTTGAGAATGTGAGTCCGGGCATGAT 4111 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 || ||| ||| | ||| || || | ||| || || ||||| || ||||| || Sbjct 4110 GCCACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTGAAGAAAATGCCCTCAAC 4051 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTG-CTAGATATCCATTTTCT 11817 ||||||||| || | || | ||| ||| | || ||| || || | ||||| | Sbjct 4050 AGCTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAG 3991 Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877 |||||||| || ||||| || || || || || || || || || || | | Sbjct 3990 AGCCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATTGAACAGGAACTC 3931 Query 11878 TTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAAT 11937 ||| ||| | ||| | | || || || || | | ||| ||||| || || | Sbjct 3930 TTTCTCTTGAGGATCCCGGATGTACGTGTCAATCAGCAGACTGTACATCTCACTGTGCAC 3871 Query 11938 ATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCAC 11997 ||| ||||| || || ||||| |||||||| ||| ||||| | || || ||| Sbjct 3870 ATTCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCGGTTATTTGCACCTCCTG 3811 Query 11998 ATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | || | ||| | | ||||||||| ||||| ||||| || || || || || | Sbjct 3810 ACTGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGGCGAAGAAAGCCAA 3751 Query 12058 TATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 | || || || | | || ||| ||| ||| ||| | ||| | || Sbjct 3750 CACGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATT----CCAGTGATCAATAT 3695 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTT 12173 || |||| ||| || || || || ||||| || || | | |||||| ||||| | Sbjct 3694 CTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGGACGCTTCAGCTTGTTTGTACATCT 3635 Query 12174 TCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||||| ||||| |||| |||||| || | ||||| || Sbjct 3634 CCCAGATGTCATGGTACTGAATAGGAAATACCACGAATCT 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467899167121440