Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4578 271 1e-67 seq26202 217 2e-51 seq2745 214 2e-50 seq2952 89.7 7e-13 >seq4578 Length=10518 Score = 271 bits (300), Expect = 1e-67 Identities = 760/1156 (66%), Gaps = 23/1156 (2%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || ||||| || || | ||||| || |||| || || || || ||||| | Sbjct 6884 TACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGAA 6943 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || |||||||| || | ||| || || ||||| || || ||||| || || |||| || Sbjct 6944 GGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAA 7003 Query 65300 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 ||| || | || ||||| | ||||| | |||| ||||||||||| | | Sbjct 7004 CGAATTCCTCACGCC--ATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAA 7061 Query 65358 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 65416 |||| ||| || || ||||| || || | | || |||| Sbjct 7062 TCCGTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGAC-ATCC 7120 Query 65417 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 65476 | | ||||| ||||| ||||| ||||||||| | ||| ||||| ||||| || ||||| Sbjct 7121 TGCGTATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACC 7180 Query 65477 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATG 65535 ||| || ||||| |||||||| | || ||| || | |||| ||||| ||| ||| | | Sbjct 7181 GTAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCTTCTTCGCTGTCATAGG 7239 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 | | | | ||| || || || || | || ||||| ||||| || || || || | Sbjct 7240 GCAGACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGT 7299 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 | ||| |||| || | || || ||||| | ||||| || || || || || | ||| | Sbjct 7300 GCCTCATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGT 7359 Query 65656 TGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCT 65712 | | ||| | | ||||| ||| | | || | || ||||| |||||| | || Sbjct 7360 TCAAATTGCGCGTAACAAT--CTTCGTC-ACTGCTTTGAGTTTCTCAAAATCGTACGTCT 7416 Query 65713 CATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 ||| |||| ||||| || | |||| |||||||||||| || || || | ||||| Sbjct 7417 TATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCAT 7476 Query 65770 --TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 65827 | | | || ||||| || || || ||||| | ||| ||||| || || || | Sbjct 7477 CCTTGGA--CGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAAT 7534 Query 65828 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 65887 ||| || ||||| ||||| |||| |||||||| || || | ||| | || || ||||| Sbjct 7535 ATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGT 7594 Query 65888 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTA 65947 ||| | ||| | || || || ||||| ||| || ||| | | || Sbjct 7595 TTCCACTTGACTCTGAATTATGGCAAACCAGAGATCTCTCGCAGGAATTCTCCTGATATA 7654 Query 65948 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 66007 || ||| | || || | |||||| | ||| | || ||||| || Sbjct 7655 CCTACCTTCCTTCTCATACTTCATGTACAATTCATTGAATTTCTCACCCCAGCAATCAAA 7714 Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 |||||| |||| | || |||||||||||| ||| || || || || |||| | Sbjct 7715 CAATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTG 7774 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGT 66126 |||||| ||||| || ||||| ||||| ||| || | ||| || | || | ||| | Sbjct 7775 CATAAACAGATCCGGGATCCACAGAGC-ATAGAACAGATCCCTTGCTCGTGCCTTCTCCT 7833 Query 66127 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGT 66186 | || |||||||| || ||||| | ||| | | || ||| ||||| || |||| || Sbjct 7834 TGCCCGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAGGT 7893 Query 66187 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 66246 | || || | | || || || ||||| || |||||||| | ||| | || || | | Sbjct 7894 AGATAGCAAAGGCACCGGGACGCTTGTTCCCACCCTGATCAACGTAGCAGGCTGTTGTGT 7953 Query 66247 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 66306 | || || | | |||||| | || |||||||| || |||||||| |||| |||| | Sbjct 7954 TGTAGACACGAAGCATTGGGACAAGGCCATTGGAGGTGCCATTGGTGCCGGCAATATGAC 8013 Query 66307 TTCCACTTGCACGAAT 66322 | || | |||||||| Sbjct 8014 TGCCCCGAGCACGAAT 8029 Score = 235 bits (260), Expect = 7e-57 Identities = 704/1070 (66%), Gaps = 31/1070 (3%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || ||||| || || | ||||| ||| |||| || || || || ||||| | Sbjct 3557 TACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGAA 3616 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || |||||||| || | ||| || || ||||| || || ||||| || || |||| || Sbjct 3617 GGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCAA 3676 Query 65300 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 ||| || | ||| ||||| | ||||| | ||||| ||||||||||| | | Sbjct 3677 CGAATTCCTCACACC--ATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAA 3734 Query 65358 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 65416 |||| ||| || || ||||| || || | | || |||| Sbjct 3735 TCCGTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGAC-ATCC 3793 Query 65417 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 65476 | | || || ||||| ||||| ||||||||| | ||| ||||| ||||| || ||||| Sbjct 3794 TGCGTACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACC 3853 Query 65477 GTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATG 65535 || || ||||| |||||||| | || ||| || | |||| || || ||||||| | | Sbjct 3854 ATAGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTG-GCCTCTTCGCTATCATAGG 3912 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 | | | | ||| || || || |||| || ||||| ||||| || || || || | Sbjct 3913 GCAGACGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGT 3972 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 ||||| |||| || | || || ||||| | ||||| || || || || || | ||| | Sbjct 3973 GTCTCATATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGT 4032 Query 65656 TGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCT 65712 | | ||| | | ||||| ||| | || | || ||||| ||| || | || Sbjct 4033 TCAAATTGCGCGTAACAAT--CTTCGTT-ACTGCTTTGAGTTTCTCAAAGTCGTACGTCT 4089 Query 65713 CATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 65769 ||| |||| ||||| || | |||| |||||||||||| || || || | ||||| Sbjct 4090 TATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCAT 4149 Query 65770 --TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 65827 | | | || ||||| || || || ||||| | ||| ||||| || || || | Sbjct 4150 CCTTGGA--CGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAAT 4207 Query 65828 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 65887 ||| || ||||||||||| |||| |||||||| || || | ||| | || || ||||| Sbjct 4208 ATTCTGCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGT 4267 Query 65888 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGA---CTCG-AGCCTTTATTATAGATT 65943 ||| | ||| | || || || ||||| || |||| || || | | || Sbjct 4268 TTCCACTTGACTCTGAATTATGGCAAACCAGA-GATCCCTCGCAGGAATTCTCCT-GA-- 4323 Query 65944 TGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 66003 | || || ||| | || || | |||||| | ||||| || ||||| || Sbjct 4324 TATACCTACCTTCCTTCTCATACTTCATGTACAATTCATTGAACTTCTCACCCCAGCAAT 4383 Query 66004 TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 66063 ||||| |||| | || |||||||||||| ||| || || || || |||| Sbjct 4384 CAAATAATCCTGGACTCTGATTCGGACACATCAAACTCCATTCCCCATCTTCAGATACTC 4443 Query 66064 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCC 66122 | |||||| ||||| || ||||| ||||| ||| || | ||| || | || | | Sbjct 4444 TCTGCATAAACAGATCCGGGATCCACAGAGC-ATAGAACAGATCCCTTGCTCGTGCCTTC 4502 Query 66123 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCC 66182 || || || || ||||| || ||||| | ||| | | ||| ||| ||||| || ||| Sbjct 4503 TCCTTGCCCGTGTTCTTCTTGAGATCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCC 4562 Query 66183 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 66232 | ||| || || | | || || || ||||| || || ||||| | ||| Sbjct 4563 AGGTAGATAGCAAAGGCACCGGGACGCTTGTTCCCACCTTGATCAACGTA 4612 >seq26202 Length=13276 Score = 217 bits (240), Expect = 2e-51 Identities = 413/606 (68%), Gaps = 9/606 (1%) Strand=Plus/Minus Query 36142 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 36201 ||| || ||||||||||| || || || ||||| | ||| || || | | || | || Sbjct 1473 ATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTC 1414 Query 36202 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261 ||| || || |||||||||||||| | |||||| ||| ||||| || || || || || Sbjct 1413 GTTCGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAA 1354 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA----T 36317 ||| ||||||||| || || || || ||||||||||| | | || ||| | Sbjct 1353 GCTTCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTT 1294 Query 36318 AAC--CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | | | |||| || ||||||| |||||||||| |||||||| || ||||| || Sbjct 1293 AGCTTCCTGACTGGCA---ATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGG 1237 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 || ||||| || ||||| ||||| | | ||| || | ||| | || || || Sbjct 1236 CAGCGTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTC 1177 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||| | ||||| ||||| || || | || || ||||| || ||||| || ||||| Sbjct 1176 AATTAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAA 1117 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555 |||||||||| || || || || || || || || || | | ||| ||||| || Sbjct 1116 GAATCTAGCCTCTGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGAC 1057 Query 36556 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGG 36615 || || || || ||||| || ||||| || || || || | | || Sbjct 1056 AATCCCATCGGAAGCGGCAAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATC 997 Query 36616 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 | ||| |||||| | || ||||| || | ||||||||| ||||| ||||| || Sbjct 996 CTTCAGTGCATTCCAGTGATCAATATCCCGGGACAGATCCACTTCCTCCACCGTCCAGAA 937 Query 36676 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 36735 || || || || | ||| ||||| | |||||||||||| || ||||| ||||| | || Sbjct 936 GGACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCAC 877 Query 36736 AAATCT 36741 ||||| Sbjct 876 GAATCT 871 >seq2745 Length=20976 Score = 214 bits (236), Expect = 2e-50 Identities = 411/606 (68%), Gaps = 9/606 (1%) Strand=Plus/Minus Query 36142 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 36201 ||| || ||||||||||| || || || ||||| | || || || | | || | || Sbjct 4197 ATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTC 4138 Query 36202 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261 ||| || || |||||||||||||| | |||||| ||| ||||| || || || || || Sbjct 4137 GTTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAA 4078 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC 36321 ||| |||||||| || || || || ||||||||||| | | || ||| | Sbjct 4077 GCTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTT 4018 Query 36322 GGC------ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 || |||| || ||||||| |||||||||| |||||||| || ||||| || Sbjct 4017 AGCTTCCTGACTGGCA---ATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGG 3961 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 || ||||| || ||||| || || | | ||| || | | ||| | || || || Sbjct 3960 CAGCGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTC 3901 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||||| ||||| ||||| || || | || || ||||| || ||||| || ||||| Sbjct 3900 AATCAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAA 3841 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555 ||||||||||||| || || || || || || || || | | ||| ||||| || Sbjct 3840 GAATCTAGCCTCGGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGAC 3781 Query 36556 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGG 36615 || || || || || || || ||||| || || || || | | || Sbjct 3780 AATCCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATC 3721 Query 36616 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 | ||| |||||| | || |||||| |||| |||||| || || || ||||| || Sbjct 3720 CTTCAGTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAA 3661 Query 36676 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 36735 || || || || | ||| ||||| | |||||||||||| || ||||| ||||| | || Sbjct 3660 GGACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCAC 3601 Query 36736 AAATCT 36741 ||||| Sbjct 3600 GAATCT 3595 >seq2952 Length=20052 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| ||||||||||| | | || || ||||| || || || ||||||||||| Sbjct 6241 TTGTCCACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCCG 6300 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| || || | |||| |||| || || || || |||||| ||| | || Sbjct 6301 GTTTTCAGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGGT 6360 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 ||||| | | || || | || ||||| || || || |||||||| | ||| || ||| Sbjct 6361 TCTGCCACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCC 6420 Query 65010 ATTTTTATGATCGTCTT 65026 || | || || ||||| Sbjct 6421 ATCTCGATCATGGTCTT 6437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657293925405840