Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq186 91.5 1e-13 seq4578 82.4 8e-11 >seq186 Length=148488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| || || ||||||| ||||| || || || |||||||| ||| Sbjct 13399 GCCTCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 13340 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || ||||| || || ||||| | || ||||||||||| || || || Sbjct 13339 CAAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 13280 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || || || || | | || | ||||| | ||||| || Sbjct 13279 GATACCCTCCTTATCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAAC 13220 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||| ||||| | ||||| || || |||||||| Sbjct 13219 TTCAAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCAT 13172 >seq4578 Length=10518 Score = 82.4 bits (90), Expect = 8e-11 Identities = 127/175 (73%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC---GGGCGCGCAATATT 157103 |||||| ||||| || || ||||| || || ||| | || || || || |||||| Sbjct 7435 TATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTGGACG---AATATT 7491 Query 157104 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAAT-TACTT-TGATTGCT 157161 ||| ||||| | ||||||||||| || || ||| |||| | || |||||||| Sbjct 7492 CTACAATTTCTGTGCACAAATTGCTACAGCGAATTG-TCC-CAATATTCTGCTGATTGCT 7549 Query 157162 TTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 157216 || | |||||| || || ||||| ||||||||||| || || ||||| ||||| Sbjct 7550 CTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCACTTGA 7604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506337370996320