Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq30472 187 4e-42 seq7333 149 9e-31 seq2952 138 2e-27 seq4578 113 7e-20 >seq30472 Length=3953 Score = 187 bits (206), Expect = 4e-42 Identities = 623/968 (64%), Gaps = 70/968 (7%) Strand=Plus/Plus Query 126669 TTTCAGAGCACGATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACG 126728 ||||| |||||||||| |||| || | ||| || |||||| ||| || ||||| Sbjct 2633 TTTCAATCCACGATCAATAAAGTCCACCACGCGATCCATGTCAGCCTCCACGAGGCCACG 2692 Query 126729 GGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCC 126788 || || | || ||||| || || | ||||| || | |||||| ||| || || Sbjct 2693 AGTTGTGAGAGCCGGAGTCCCCAGACGAATGCCCGAAGGATTCAGAGCGGACTTATCACC 2752 Query 126789 GGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCG---AGGATGCGCTCTGCCGG 126845 ||| || || ||||| |||||||| || ||| ||| | || ||| ||| Sbjct 2753 GGGAACGGTATTTTTATTGCAAGCAATAG---ACACTTCCTCCAAAATATACTCAGCCTT 2809 Query 126846 TGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCC 126905 ||||||| ||||| || ||||| |||| ||| | ||||| |||||||| || || Sbjct 2810 GGCTCCTGTCAGTCCAACCGAACGCAAGTCCATTAGCAGAAGATGAACATCGGTGCCTCC 2869 Query 126906 AGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAA-CTGTGCATTTCGCA 126964 ||||| | || |||||| | | ||| |||| ||| | | ||||||||| | | Sbjct 2870 AGTGGCAATGGAGTAGCCCCTCTCGATGAGACCCT-TGCACAGACGCTGTGCATTGAGAA 2928 Query 126965 CCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTGGCGA 127024 ||| | | ||||| |||| || | | |||||||| | | || ||||| | Sbjct 2929 TCACCTGCTTCTGGTACTCCACAAATTCCGGCGACTTGGCCTGGAGGAATGTCGTGGCTA 2988 Query 127025 TCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCTCGTTCAA 127084 | || ||||| | ||||| || || || || || || || || || || ||| | | | Sbjct 2989 TGGCAGCAATTGCATGATTATGAGGACCTCCCTGAAGTCCTGGGAAGACCGCTTGATTGA 3048 Query 127085 T------TTCCTGCTC----------TAGT--------GATTTG---------------- 127104 | |||| | || | || | |||| Sbjct 3049 TACGAGATTCCAGGTCATACATCACTTTGTCCCCATTGGCTTTGACACTCCTAACGCCCT 3108 Query 127105 --CGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCA 127162 ||| | ||||| || || || | ||||| ||||||||||| ||||| || || ||| Sbjct 3109 TCCGGAAGAAGATAACACCCGCCCTCGGACCCCTGAGAGTCTTATGCGTAGTCGTACTCA 3168 Query 127163 CAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCA--AGCCC-GCAA 127219 ||| || || |||||||| || | ||||| | | || ||| || ||||| | || Sbjct 3169 CAACATCGCAGTACTCAAACGGACTGGGAATAA---TTCCAGCAGCCACGAGCCCTGAAA 3225 Query 127220 TGTGTGCAATATCGGC-CATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 || || ||||| || || | | | | | ||| || |||||| || ||||| ||| Sbjct 3226 CATGAGCCATATCCGCAAATAAATATGCACCATTCTG-ATTGGCAATTTCCCGGAAGCGT 3284 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 | |||||||||| | | ||||||| | ||||| || || | | | || ||||| Sbjct 3285 TTGTAGTCCAAGCATCTGGAATAGCAAGACATTCCGGCGATAATGACCTTGGGCTTGAAC 3344 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 | || ||| | || ||||| | | ||||| | ||| || |||| ||||| || ||| Sbjct 3345 AACTTCGCATTTTCCTCAAGTCTATCGTAGTCAAGGAGCCCGGTCTTGGGATCAACTTTG 3404 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGC-----GGAAT 127446 || |||||||| ||||| |||| || || || || | || || |||| Sbjct 3405 TAGGGCATGCTCTCGAAGAAGATGGACGTTGCTGAGATCTTCTTGGTAGCTGTCATGAAT 3464 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| |||| ||| ||||| || || ||||| | |||||||| | | | ||||| | | Sbjct 3465 CCGTGTGTCAAGTGACCTCCATCCGGAAGATCCAAGCCCATGATACGATCATGCGGCTGA 3524 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 || || || || || || || |||||| || || || || || || ||| || Sbjct 3525 CAGAGACCCGTATAGACAGCCAAATTGGCCGGGGAACCAGAATAAGGCTGAACATTGACA 3584 Query 127567 CCCCATTC 127574 |||||||| Sbjct 3585 CCCCATTC 3592 >seq7333 Length=2231 Score = 149 bits (164), Expect = 9e-31 Identities = 390/591 (66%), Gaps = 3/591 (1%) Strand=Plus/Plus Query 70035 TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCC 70094 ||||||| | || ||||| || || | ||||| ||| |||||||||| || || || | Sbjct 1123 TGGATTCAATGGGATTCACGGAGCGAGAGGAGGGTGATTTGGGGCCAGTTTATGGCTTTC 1182 Query 70095 AGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTG 70154 ||||| | |||| || || |||| || || |||| || ||||| | Sbjct 1183 AGTGGCGTCACTTTGGAGCCCCCTATGGCACATGTAAGGATAACTACGTTGGACAGGGCG 1242 Query 70155 TTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCG 70214 | ||||| || || | ||| | || | || |||| ||| || |||| Sbjct 1243 TGGATCAGCTGAAGGAGGTGATTCAGCGCATCCGGGAGAAGCCAAATGATCGGCGGATTA 1302 Query 70215 TAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTA-CCACCGTGTCACTGT 70273 | ||| || |||||||||||| ||||| | | |||||||||| ||||| |||||||| Sbjct 1303 TCATGAGCGCATGGAATCCTGTGGATTTACCCATAATGGCACTACCCACCCTGTCACTGC 1362 Query 70274 TTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCC 70333 | | ||||||||| | | |||| || | || ||| |||||||| | || Sbjct 1363 CTCGTGCAGTTTTACGTGGCCAATGGGGAACTCTCCTGCCAGATGTATCAACGATCGGCA 1422 Query 70334 GACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATT 70393 || |||||| | ||||| || || |||||||| ||||| | | | || | || || Sbjct 1423 GATATGGGCTTGGGTGTTCCATTCAACATTGCCAGCTACGCCCTTCTCACTCGAATCATC 1482 Query 70394 GCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTG 70453 || ||||| || | || || | || || || ||||| | || || ||||| || Sbjct 1483 GCCCACATAACTGATCTCAAGCCTGGGGATTTTGTCCACACTCTGGGAGATGCTCATGTC 1542 Query 70454 TATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCC 70513 ||| |||||||| | ||||| | || | ||||||| || | ||| | | | ||||| Sbjct 1543 TATCTAAATCACGTTGAGCCTCTGAAAGAGCAACTCCTAC-GTCGCCCAAAGCCCTTCCC 1601 Query 70514 AA-GCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTAT 70572 || ||| ||||| |||| || || | ||||| || |||| ||| |||||| | Sbjct 1602 AACGCTCAAGTTTTCTCGGAAGGTGACTGACATTGAGGACTTCAAGTTCGAGGATTTTGT 1661 Query 70573 AATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTA 70623 | || | ||| |||| | || ||||| | |||| |||| ||||| Sbjct 1662 GCTGAATGACTACAATCCCCATCCCAAGATCGCGATGGAGATGGCAGTTTA 1712 >seq2952 Length=20052 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 |||||||||| || |||||||| | ||||| ||||||| ||||| || ||| ||| Sbjct 6466 TCTACAAGACCGTTTGGGAGATCAAGGTGAAGACCATGATCGAGATGGCGGCTGACCGAG 6407 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 | | || |||||||||||||| || ||||| | ||||| || || |||| ||| | Sbjct 6406 GAGCCTTTATTGACCAGAGTCAGTCATTCAACATTTACGTGGCAGAACCCAATTACGGCA 6347 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 | ||||| || ||||| ||||| ||||| ||||||| || || || |||||||| | Sbjct 6346 AACTCACTTCCATCCACTTCTACGCCTGGAAGCAGGGCCTGAAAACCGGAATGTACTACC 6287 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || | || || | || ||||||| || | ||| || |||||| Sbjct 6286 TGCGCACCAAACCAGCGGCCAATGCAATTCAATTCACCGTGGAC 6243 >seq4578 Length=10518 Score = 113 bits (124), Expect = 7e-20 Identities = 360/553 (65%), Gaps = 4/553 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || || |||| | ||| |||||| || |||||||| | | ||||| ||| | | Sbjct 7999 ACCAATGGCACCTCCAATGGCCTTGTCCCAATGCTTCGTGTCTACAACACAACAGCCTGC 7940 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 |||||| ||||| || || || || || || || | || ||||| |||| || ||| Sbjct 7939 TACGTTGATCAGGGTGGGAACAAGCGTCCCGGTGCCTTTGCTATCTACCTGGAGCCCTGG 7880 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 |||| ||| | ||||| ||| | || | || || | ||| || |||||||| Sbjct 7879 CACGGTGACATCTTTGAGTTTTTGGATCTCAAGAAGAATACGGGCAAGGAGAAGGCACGA 7820 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || ||||| |||| ||||| || ||| | || ||| |||| ||| || | || || Sbjct 7819 GCAAGGGATCTGTTCTATGCTCTGTGGATCCCGGATCTGTTTATGCAGAGAGTATCTGAA 7760 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTC-GTCACCCGGTCTGTCCGATTGCTGGGG 97105 | ||| | ||||| | ||||| || || || | || || ||| ||||||||||| Sbjct 7759 GATGGGGAATGGAGTTTGATGTGTCC-GAATCAGAGTCCAGGATTGTTTGATTGCTGGGG 7701 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT 97165 || | || | | ||||| | || ||| | || || | || | || || | Sbjct 7700 TGAGAAATTCAATGAATTGTACATGAAGTATGAGAAGGAAGGTAGGTATATCAGGAGAAT 7641 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 ||| |||| || ||| ||||| | | ||| || || ||||| || ||||| Sbjct 7640 TCCTGCGAGAGATCTCTGGTTTGCCATAATTCAGAGTCAAGTGGAAACTGGGACGCCGTA 7581 Query 97226 CATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| | ||||| ||| |||| || | || ||||| || | | | || || || Sbjct 7580 CATGTTGTACAAAGAT-GCGTGCAACAGGAAGAGCAATCAGCAGAATATTGGGACAATTC 7522 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 | |||| ||||||| ||||||||||| || | || ||| |||| || || | Sbjct 7521 GCTGTAGCAATTTGTGCACAGAAATTGTAGAATATTCGTCCAAGGATGAGATTGCTGTGT 7462 Query 97345 GCGTTCTGGCATC 97357 || ||||||||| Sbjct 7461 GCAATCTGGCATC 7449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740069645123760