Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq186 98.7 6e-16 seq60870 87.8 1e-12 seq7722 87.8 1e-12 seq18 84.2 1e-11 >seq186 Length=148488 Score = 98.7 bits (108), Expect = 6e-16 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-G 33213 |||| ||| | ||| | || || || || || || ||||| || || | | || | Sbjct 14068 CGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAA----GGGTACG 14013 Query 33214 GTCATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | ||||| | ||| || ||| ||| || |||||||||||||| | || || ||||| Sbjct 14012 GCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTC 13953 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || |||| ||| || ||| ||| || || |||| ||| |||||||| Sbjct 13952 TTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGT 13893 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || |||||||| ||||||||||||||| Sbjct 13892 AATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || |||||||| | || ||||| || || || ||||| || ||||| || | Sbjct 13386 CGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA 13327 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||||| ||| || || | |||||||||||| | ||| || || || || Sbjct 13326 TCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTA 13267 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| |||| ||| || || || Sbjct 13266 TCTTGGATCTTAGCC---TTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTG 13210 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| ||||| ||||| || ||||||||||| Sbjct 13209 ATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCAT 13172 >seq60870 Length=785 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||| |||||||| || |||||||||||||| | | || || || ||||| Sbjct 725 ATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCATCTTCTAATTG 666 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||||| ||| |||||||||||||| || | || ||||| ||||| || Sbjct 665 CTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTATC 615 >seq7722 Length=1803 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||| |||||||| || |||||||||||||| | | || || || ||||| Sbjct 120 ATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCATCTTCTAATTG 61 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||||| ||| |||||||||||||| || | || ||||| ||||| || Sbjct 60 CTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTATC 10 >seq18 Length=974545 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-G 33213 |||||||| | ||||| || ||| || || ||||||||||| |||| | || | Sbjct 449661 CGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACA----GTGTACG 449606 Query 33214 GTCATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | ||||| | |||||||| ||| || ||||| ||||| |||| || || || || Sbjct 449605 GCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTC 449546 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || || |||| ||| || ||| ||| || || ||||| || |||| || Sbjct 449545 CTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGT 449486 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| ||||||||||| || || || || ||||| || Sbjct 449485 GATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTT 449444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318362570093748