Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 seq186 96.9 2e-15 >seq18 Length=974545 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||| | ||| || |||||||| || || ||||| ||||| | | ||| |||| Sbjct 449658 AACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCC 449599 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||| ||||| ||||| || ||||| ||| |||| | || || || || Sbjct 449598 TCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCC 449539 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||| || | ||| ||||||| || ||||| || | || || ||| Sbjct 449538 TGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTT 449479 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | |||||||||||| || ||||| Sbjct 449478 TTCCCCGTAAGAGTCTTCACAAAGATCTGCAT 449447 >seq186 Length=148488 Score = 96.9 bits (106), Expect = 2e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||| || ||||| ||||| ||||||||||| |||| | ||||||| Sbjct 14010 CATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTT 13951 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || |||||| | ||| ||||| | || || || || | |||| Sbjct 13950 TATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAA 13891 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || ||||| | ||| || || || ||||||||| Sbjct 13890 TTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354315700186248