Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2745 123 2e-23 seq26202 114 1e-20 >seq2745 Length=20976 Score = 123 bits (136), Expect = 2e-23 Identities = 395/608 (65%), Gaps = 6/608 (1%) Strand=Plus/Minus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 |||||||| ||||||| ||| ||||| |||||||||||||||||||| | | || ||| Sbjct 4199 AGATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGC 4140 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 |||||||| ||||| || || ||||| | || ||| ||| | ||| || || | ||| Sbjct 4139 TCGTTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCG 4080 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || || || || || || ||||| |||||||| || |||| | ||| ||| | Sbjct 4079 AAGCTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAG 4020 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 || | | ||| | ||||||| ||||| | ||| || | || || ||| | Sbjct 4019 TTAGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGC 3960 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 | | || || || || || | | | ||| || | | || || || || || Sbjct 3959 AGCGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCA 3900 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 |||| | || ||||| || || | ||| ||||| || || || || ||||| || Sbjct 3899 ATCAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAG 3840 Query 13493 CATCTAGCCTCTGATACCTG-AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551 |||||||||| | || || | || | || | || | || | | || || || || Sbjct 3839 AATCTAGCCTCGGTTATTTGCACCTCCTGACT-GAAGCGCTCCACCAGATTCTCATTGAC 3781 Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 ||||| || ||| || || ||||| | | ||| ||| || || | || || Sbjct 3780 AATCCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCACAATC 3721 Query 13612 --TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAA 13669 | | | || ||| | || |||| |||| ||| |||||||| || ||||| Sbjct 3720 CTTCAGTGCATT--CCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAG 3663 Query 13670 AAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACA 13729 || || || |||| | || |||||| ||| || || | || ||| ||||| || Sbjct 3662 AAGGACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACC 3603 Query 13730 ACGTATCT 13737 ||| |||| Sbjct 3602 ACGAATCT 3595 >seq26202 Length=13276 Score = 114 bits (126), Expect = 1e-20 Identities = 251/376 (67%), Gaps = 0/376 (0%) Strand=Plus/Minus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 |||||||| ||||||| ||| ||||| ||||||||||| |||||||| | | || ||| Sbjct 1475 AGATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGC 1416 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 ||||| || ||||| || || ||||| | || ||| ||| | ||| || || | ||| Sbjct 1415 TCGTTCGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCG 1356 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || || ||| || || || ||||| |||||||| || |||| | ||| ||| | Sbjct 1355 AAGCTTCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAG 1296 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 || | | ||| | ||||||| ||||| | ||| || | || || ||| | Sbjct 1295 TTAGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGC 1236 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 | | || || || || || | | | ||| |||| || || || || || Sbjct 1235 AGCGTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCA 1176 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || | | || ||||| || || | ||| ||||| || || || || ||||| || Sbjct 1175 ATTAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAG 1116 Query 13493 CATCTAGCCTCTGATA 13508 |||||||||||| || Sbjct 1115 AATCTAGCCTCTGTTA 1100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430421285966052