Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq186 152 1e-31 seq18 140 7e-28 seq60870 136 9e-27 seq7722 116 9e-21 seq165 111 4e-19 seq7442 107 4e-18 seq67752 84.2 5e-11 >seq186 Length=148488 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| ||||| || || ||||| || || || | || || Sbjct 14065 AGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCC 14006 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| ||||||||||| | | || || || ||||| ||||||||||||||| Sbjct 14005 TCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATCC 13946 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| |||||||| | ||||| ||||| || || || ||||| ||| Sbjct 13945 TGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGTC 13886 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || || ||||| Sbjct 13885 TTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || |||||||| || |||||||| || || | ||| ||||| Sbjct 13152 ACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATCTTCA 13093 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||||||||| || | ||| || || || || || || || ||||||||| Sbjct 13092 AGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 13033 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | ||||| || || ||||| || || || |||||| Sbjct 13032 ATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATGGTCTTA 12973 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || ||||| ||||||||| Sbjct 12972 CCGGTCAAAGTCTTCACAAAGATCTGCATT 12943 Score = 145 bits (160), Expect = 2e-29 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| ||||| |||||||| || || | ||| ||| Sbjct 13609 AGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGACCATCT 13550 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| ||||| ||||| || | | |||||| || || || || || || |||||| Sbjct 13549 TCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTATCC 13490 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || |||| | ||||| |||||| ||||| || ||||| ||| Sbjct 13489 TGAAT-TTGGCCTTCAC-GTTTCAATAGTATCAGAAGGTTCGACCTCAAGGGTAATGGTC 13432 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || ||||| |||||||| Sbjct 13431 TTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 13400 >seq18 Length=974545 Score = 140 bits (154), Expect = 7e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| || || || || || | || || || || || ||||| ||||| Sbjct 449637 TCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAG 449578 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| ||||| ||||| ||||| || || ||||||||||||||||| |||||| Sbjct 449577 ATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTT 449518 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| ||||| ||||| | || || || || || ||||| || || ||| Sbjct 449517 TCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACA 449458 Query 104549 AATATCTGCATTTTG 104563 || |||||||||||| Sbjct 449457 AAGATCTGCATTTTG 449443 >seq60870 Length=785 Score = 136 bits (150), Expect = 9e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||| || |||||||||||||| || ||||| || || | || || Sbjct 734 AAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCATC 675 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| ||| |||||||||||||||| | || ||||| || || || || |||||||| Sbjct 674 TTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTATC 615 Query 104467 CTGAATCTTTGCTTTTACATTTTCT 104491 ||||||||| ||||| ||||||||| Sbjct 614 CTGAATCTTGGCTTTAACATTTTCT 590 >seq7722 Length=1803 Score = 116 bits (128), Expect = 9e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||| || |||||||||||||| || ||||| || || | || || Sbjct 129 AAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAAAGGGTACGTCCATC 70 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| ||| |||||||||||||||| | || ||||| || || || || |||||||| Sbjct 69 TTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGCCCTCTTTATC 10 Query 104467 CTGAATCTT 104475 ||||||||| Sbjct 9 CTGAATCTT 1 >seq165 Length=164173 Score = 111 bits (122), Expect = 4e-19 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||||||||| ||||| || || || || || | || || ||||| ||||| Sbjct 30381 TCCTTCTGAATATTGTAGTCCGAGAGTGTATGGCCATCCTTAAGCTGCTTTCCGGCAAAG 30440 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || ||||||||| |||| ||||| || || |||||||||||||| | |||||| Sbjct 30441 ATCAGATGCTGTTGATCTGGAGAAATTCCCTCCTTGTCCTGAATCTTTGCAATCACATTT 30500 Query 104489 TCTACGG-TATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | || ||| | |||||||| || | ||| || || || | |||| || || || Sbjct 30501 TCAATGGTTATTG-AGGGTTCTACTTCCAATGTGATGGTTTTCTCCGTAA--GTCTTCAC 30557 Query 104548 AAATATCTGCATTT 104561 ||| |||||||||| Sbjct 30558 AAAGATCTGCATTT 30571 >seq7442 Length=2102 Score = 107 bits (118), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 13/213 (6%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || ||||||||||| || || ||||| || || | | || Sbjct 1818 AAGCACAAGATGCAGCGTTGACTCTTTCTGAATTTTGTAATCAGAGAGGGTACGTGCATC 1877 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| ||| |||||||||||||||| | || ||||| || || || | | Sbjct 1878 TTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGGATGC---------C 1928 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| ||||| |||||||| | |||||| ||| || ||||| | || || || Sbjct 1929 CTGAATCTTAGCTTTAACATTTTCGATGGTATCAGAAGGCTCCACCTCGAAGGTGATTGT 1988 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||||| || || || ||||| Sbjct 1989 TTTTCC----CGTGTTTTCACGAAGATTTGCAT 2017 >seq67752 Length=654 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||| || || || || ||||||||||||||||| ||||| |||||||| | |||| Sbjct 16 TGCTGATCTGGTGGGATGCCCTCTTTATCCTGAATCTTAGCTTTAACATTTTCGATGGTA 75 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || ||| || ||||| || || || || || || ||||||| || || || ||| Sbjct 76 TCAGAAGGCTCCACCTCGAGGGTGATTGTTTTTCC----CGTGTTTTCACGAAGATTTGC 131 Query 104558 AT 104559 || Sbjct 132 AT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149822471654808