Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2154 116 2e-21 seq48040 114 7e-21 seq784 113 2e-20 >seq2154 Length=25141 Score = 116 bits (128), Expect = 2e-21 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || | |||| | ||||||||||| |||||||||| ||||||||||||||||| Sbjct 1225 AATCAAAATAAAAAGATATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 1284 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 1285 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 1317 >seq48040 Length=1161 Score = 114 bits (126), Expect = 7e-21 Identities = 89/105 (85%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| ||| ||| || || |||||||| ||||||||| |||||||||| ||||| Sbjct 1042 AGGAAAAAATAATATGAA-AAAAAATC----TGGCCCATGGGGGGATCGAACCCACGACC 988 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 987 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 943 >seq784 Length=56877 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 39785 AACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACC 39726 Query 11513 AACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||| Sbjct 39725 AACTGAGCTAATGGGCCGT 39707 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 39941 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 40000 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 40001 TGAGCTAATGGGCC 40014 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261150753656776