Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq186 125 6e-24 seq18 114 1e-20 seq83690 105 6e-18 >seq186 Length=148488 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || ||||| | ||| | || || ||||| || | | Sbjct 13864 AAAATTTGCATGCCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATG 13805 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || | ||| | ||| |||| |||||| ||| ||||||| || | ||| Sbjct 13804 TTGTAGTCAGAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGC 13745 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || || ||||| ||||| | || || ||||||||| | | ||||||| Sbjct 13744 TGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCA 13685 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | || ||||| |||||||| || || || |||||||||||||| Sbjct 13684 GAGGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 178/261 (68%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 94753 CGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAG 94811 || ||| |||||| |||| ||| || ||| || | | ||||| || | || | | Sbjct 13199 CGGTAAGGGTTTTGACAAAAATTTGCATTCCACCACGGAGACGCAAGACAAGATGGAGGG 13140 Query 94812 TAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCC 94869 |||| ||||| || | ||| || || | || || || ||| || || || || || Sbjct 13139 TAGACTCCTTCTGAATGTTGTAGTCAG--AAAGGGTACGACCATCTTCAAGTTGCTTGCC 13082 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 |||| || | | ||||| ||||| ||||| || || || || | ||| || ||||| Sbjct 13081 AGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGAATCTTAGCCTT 13022 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || | | || |||| | | ||||| |||| |||||||| || || || | ||| Sbjct 13021 CACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATGGTCTTACCGGTCAAAGT 12962 Query 94990 TTTCACAAAGATCTGCATGCT 95010 ||||||||||||||||| || Sbjct 12961 CTTCACAAAGATCTGCATTCT 12941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| || |||| || || | |||||| ||||||||||| |||||||| Sbjct 14009 ATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTT 13950 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || || ||||| | | || |||| | || || || | || || Sbjct 13949 ATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAAT 13890 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| || |||||||| || || || ||||||| Sbjct 13889 TGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCATGC 13852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || |||||| ||||||| || | || || || || || || || || || Sbjct 13553 ATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTT 13494 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| ||||| ||| | | ||| |||| | ||||| |||| || || Sbjct 13493 ATCCTGAATTTG-GCCTTCACGTTTCA-ATAGTATCAGAAGGTTCGACCTCAAGGGTAAT 13436 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| ||||| ||||| || || |||||||||||||||| Sbjct 13435 GGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCATGC 13398 >seq18 Length=974545 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| |||||| ||||||| || | |||||||| |||||||| || || || Sbjct 449602 ATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTT 449543 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| ||||| || || | | || || | | | || || || | ||||| Sbjct 449542 GTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGAT 449483 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || |||||||| ||||||||||||||||| Sbjct 449482 GGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCAT 449447 >seq83690 Length=433 Score = 105 bits (116), Expect = 6e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| ||||||||||| | ||| || || | ||| | ||| |||| Sbjct 233 CAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCA 174 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 || ||||| | ||||| | | ||||| |||||||| || ||||| ||||| | | Sbjct 173 ATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGA 114 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||||||| | | ||| || | | ||||| |||| |||||||| || | Sbjct 113 TCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGC 54 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || || || |||||||||||||||| Sbjct 53 CAGTGAGGGTCTTGACAAAGATCTGCATGC 24 Score = 102 bits (112), Expect = 7e-17 Identities = 117/156 (75%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || |||||| ||||||| || | ||||| |||||||| || ||||| || Sbjct 408 ATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGAGGGATTCCTTCCTT 349 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| |||||||| | | ||||||| | | || || || | || || Sbjct 348 GTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCAGAGGGCTCAACTTCGAGAGTAAT 289 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || || |||||||||||||| Sbjct 288 GGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447692585553360