Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq97374 178 2e-40 seq32868 168 1e-37 seq14 168 1e-37 seq3066 163 4e-36 seq57024 159 5e-35 seq87 159 5e-35 seq420 127 3e-25 >seq97374 Length=452 Score = 178 bits (196), Expect = 2e-40 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| |||||||| ||||||||||||||||||||||| || Sbjct 311 CGTGATAACATCCAGGGCATCACGAAGCCAGCCATCCGTCGTCTGGCTCGTCGTGGCGGC 252 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| ||||||| || |||| || |||| |||| ||| | || | ||||| Sbjct 251 GTGAAGCGTATCTCTGGGCTGATCTACGAGGAGACCCGTGGTGTCCTCAAAGTTTTCCTT 192 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||||| | || ||||| ||||| ||| | ||||| ||||| Sbjct 191 GAGAACGTGATCCGTGATGCCGTGACTTACACCGAACACGCCAAAAGGAAGACAGTCACT 132 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| |||||||||| | || || ||||| || | | || |||||||| || Sbjct 131 GCCATGGACGTCGTCTATGCCCTCAAGCGCCAAGGTCGCACTTTGTACGGTTTTGGTGGT 72 Query 16697 TAA 16699 ||| Sbjct 71 TAA 69 >seq32868 Length=2326 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||| |||||||| ||||||||| ||||||||||||| || Sbjct 243 CGTGACAACATCCAGGGTATCACGAAGCCAGCCATCCGTCGTTTGGCTCGTCGTGGCGGT 302 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| ||||||||||| |||| || |||| ||||| ||| ||||| ||||| | Sbjct 303 GTGAAGCGTATCTCTGGATTGATCTACGAGGAGACTCGTGGTGTCCTGAAGGTCTTCTTG 362 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| || | || || || ||||| || | ||||| || || Sbjct 363 GAGAACGTGATCCGTGACGCCGTGACTTACACTGAACACGCCAAGAGGAAGACAGTTACT 422 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | |||||||| | || || ||||| || | | || |||||||| || Sbjct 423 GCCATGGACGTTGTCTATGCCCTCAAGCGCCAAGGTCGCACTTTGTACGGTTTTGGTGGT 482 Query 16697 TAATCT 16702 ||| || Sbjct 483 TAAGCT 488 >seq14 Length=1125534 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| |||||||| ||||||||| |||||||||| ||||| Sbjct 775669 CGTGATAACATCCAGGGCATCACGAAGCCAGCCATCCGTCGTTTGGCTCGTCGAGGTGGC 775728 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||||||| || |||| || |||| || | ||| | ||| |||| | Sbjct 775729 GTGAAGCGTATCTCTGGACTGATCTACGAGGAGACCCGCGGTGTCCTAAAGGTCTTTTTG 775788 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||||||| ||||||| | || || || ||||| || | ||||| ||||| Sbjct 775789 GAGAATGTTATCCGTGATGCTGTGACTTACACTGAACACGCCAAGAGGAAGACAGTCACT 775848 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | |||||||| | ||||| ||||| || | | || ||||||||| || Sbjct 775849 GCTATGGACGTTGTCTATGCTCTCAAACGCCAAGGTCGCACTCTGTACGGTTTTGGAGGT 775908 Query 16697 TAA 16699 ||| Sbjct 775909 TAA 775911 >seq3066 Length=18213 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| |||||||| ||||||||||||||||||||||| || Sbjct 358 CGTGATAACATCCAGGGCATCACGAAGCCAGCCATCCGTCGTCTGGCTCGTCGTGGCGGC 299 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| ||||||| || |||| || |||| |||| ||| | || | ||||| Sbjct 298 GTGAAGCGTATCTCTGGGCTGATCTACGAGGAGACCCGTGGTGTCCTCAAAGTTTTCCTT 239 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||||| | || ||||| ||||| || | ||||| ||||| Sbjct 238 GAGAACGTGATCCGTGATGCCGTGACTTACACCGAACACGCCAAGAGGAAGACAGTCACT 179 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| |||||||||| | || || | || || | | || |||||||| || Sbjct 178 GCCATGGACGTCGTCTATGCCCTCAAGCGCCTCGGTCGCACTTTGTACGGTTTTGGTGGT 119 Query 16697 TAA 16699 ||| Sbjct 118 TAA 116 >seq57024 Length=3436 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||| |||||||| ||||||||||||||||||||||| || Sbjct 2993 CGTGACAACATCCAGGGCATCACAAAGCCAGCCATCCGTCGTCTGGCTCGTCGTGGCGGC 2934 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| |||||||| || |||| || || | || | ||| | ||| ||||||| Sbjct 2933 GTGAAACGTATCTCTGGACTGATCTACGAGGAAACCCGCGGTGTCCTCAAGGTCTTCCTG 2874 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| || | || ||||| ||||| || | ||||| ||||| Sbjct 2873 GAGAACGTGATCCGTGACGCCGTGACTTACACCGAACACGCCAAGAGGAAGACAGTCACT 2814 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | |||||||| | || || ||||| || | | || |||||||| || Sbjct 2813 GCCATGGACGTTGTCTATGCCCTCAAGCGCCAAGGTCGCACTTTGTACGGTTTTGGTGGT 2754 Query 16697 TAA 16699 ||| Sbjct 2753 TAA 2751 >seq87 Length=344253 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||| |||||||| ||||||||||||||||||||||| || Sbjct 342756 CGTGACAACATCCAGGGTATCACGAAGCCAGCCATCCGTCGTCTGGCTCGTCGTGGCGGC 342815 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| ||||||||||| |||| || |||| |||| ||| | || ||||| | Sbjct 342816 GTGAAGCGTATCTCTGGATTGATCTACGAGGAGACCCGTGGTGTCCTCAAAGTCTTCTTG 342875 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| || | || || || ||||| || | ||||| ||||| Sbjct 342876 GAGAACGTGATCCGTGACGCCGTGACTTACACTGAACACGCCAAGAGGAAGACAGTCACT 342935 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | ||||| || | || || ||||| || | | || |||||||| || Sbjct 342936 GCCATGGACGTTGTCTACGCCCTCAAGCGCCAAGGTCGCACTTTGTACGGTTTTGGTGGT 342995 Query 16697 TAATCT 16702 ||| || Sbjct 342996 TAAGCT 343001 >seq420 Length=77879 Score = 127 bits (140), Expect = 3e-25 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | |||||||||||||||||||| || || |||||||| || Sbjct 29164 GCCAAGCGTCATCGTAAGGTGCTTCGAGATAACATCCAAGGCATTACAAAGCCAGCAATT 29105 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||||||||||||||| ||||| ||| | ||||| ||| |||||||||| | Sbjct 29104 CGTCGTTTGGCTCGTCGTGGTGGGGTCAAACGTATTTCTGGGTTGATCTATGAAGAAACC 29045 Query 16553 CGTGATGTTTTGAAG 16567 |||| ||| | ||| Sbjct 29044 CGTGGCGTTCTCAAG 29030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78977528240418