Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq186 116 3e-21 seq18 89.7 4e-13 >seq186 Length=148488 Score = 116 bits (128), Expect = 3e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||||||||| ||||||| | || || ||| | || Sbjct 12943 AATGCAGATCTTTGTGAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGCCCTC 13002 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || ||| |||| || || | ||| || || || || ||||| || |||| Sbjct 13003 TGATACGATTGAGAATGTGAAGGCTAAGATTCA-GGATAAGGAGGGCATTCCCCCAGACC 13061 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | |||||||| ||||| ||| | ||||||| ||| || | || |||| Sbjct 13062 AGCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTTTCTGACTACA 13121 Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202 | ||||| || || || || || ||| Sbjct 13122 ACATTCAGAAGGAGTCTACCCTCCAT 13147 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || ||||||| ||| | ||| Sbjct 13626 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCT 13685 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| || ||| ||||| ||||| || ||||| || || Sbjct 13686 GACACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 13745 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| ||||| || ||||||| || ||| | || ||||| Sbjct 13746 CAGCGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAAC 13805 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | ||| || | || ||||| || Sbjct 13806 ATCCAGAAGGAGTCAACCCTTCACCTTGTGTTACGTCTCAGAGGTGG 13852 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || |||| || | || || || | ||| Sbjct 13400 ATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACCATTACCCTTGAGGTCGAACCTTCT 13459 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||||| ||| ||| || || || ||||| ||||| |||||| Sbjct 13460 GATACTATTGAAACG-TGAAGGCCAAATTCAG-GATAAGGAGGGGATCCCACCGGACCAA 13517 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || ||| | ||||||| ||| || || || |||||| Sbjct 13518 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGATGGTCGTACCCTGTCTGACTACAAT 13577 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | || || Sbjct 13578 ATCCAGAAGGAGTCTACCCTCCATCTTGTCCT 13609 >seq18 Length=974545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || ||| ||||||| | || ||||| | || Sbjct 449446 AATGCAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAACCCTC 449505 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || |||| ||||| | ||| ||||| || || ||||| || || | Sbjct 449506 AGATACCATTGAAAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGAATTCCTCCGGATC 449564 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATTA 25174 | ||||| | || |||||||| || || | || |||| || |||||| || |||| Sbjct 449565 AGCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGG--ATTA 449622 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||| || || || ||| || ||| | ||| Sbjct 449623 CAATATCCAGAAGGAGAGCACCCTGCATCTCGTG 449656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432763832131190