Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq26202 327 1e-84 seq2745 304 1e-77 seq4085 123 3e-23 >seq26202 Length=13276 Score = 327 bits (362), Expect = 1e-84 Identities = 554/798 (69%), Gaps = 6/798 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| ||||||||||| |||||||| ||||| | | |||||||| || || | | || Sbjct 1623 ATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCCAGCATATCCAC 1564 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || || || || || | ||| || | || ||| || ||||| | |||||| || Sbjct 1563 TGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCGCGGATGATTTCGAT 1504 Query 93046 TACTCTACTATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACGCAAAGTCGG 93104 | | || |||| || || || || | || ||| |||| || || |||||||| Sbjct 1503 GATGCG-CTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACAGGCAAAGTCAC 1445 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 || |||||||| || || || |||| ||| || |||||| | || || | | | Sbjct 1444 AGTGCAAACCTTCATCGCGAGAGATCAGCTCGTTCGAGAATGTGAGTCCGGGCATGATGC 1385 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | ||| |||||||| || |||||||| || || || ||| || || || || || | Sbjct 1384 CACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTAAAGAAAATGCCCTCAACAG 1325 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAG 93284 ||||||| || | | |||||| |||| || || | |||| ||||| | | || Sbjct 1324 CTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAGAG 1265 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| || || ||||| | ||| || || || || || || || || ||| | ||| Sbjct 1264 CCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATTGAAGAGGAACTCTT 1205 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 ||| | || ||| || ||||| || || |||| |||| ||||| ||| || |||| Sbjct 1204 TCTCCTGCGGATCCCGGATGTACGTGTCAATTAGCAGACTGTACATCTCACTGTGCACAT 1145 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 ||||||| ||||| || || || ||||| ||||||| || || || ||||| || ||| Sbjct 1144 TCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCTGTTATTTGCACCTCCTGAC 1085 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 || | ||| || ||||| |||||||| || |||||||| || ||||| |||||||| | Sbjct 1084 TGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGGCAAAGAAAGCCAACA 1025 Query 93525 TATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT--AGATCTTT 93582 || || || | ||||| ||| || || || ||| | ||| | ||| Sbjct 1024 CGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTCCAGT--GATCAATATCCCG 967 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 || ||||| ||||| || || ||||| || || ||||| |||| ||||||||| ||||| Sbjct 966 GGACAGATCCACTTCCTCCACCGTCCAGAAGGACGCTTCAGCTTGTTTGTACATCTCCCA 907 Query 93643 TATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGG 93702 ||||| || || ||||| ||||||| || || | | || || || | || || || Sbjct 906 GATGTCATGGTACTGAATAGGAAATACCACGAATCTCCTGGGATTCTCCCTGAGCAAGGG 847 Query 93703 CTCTAGTTGTGGGTCAAA 93720 ||| | || ||||||||| Sbjct 846 CTCCAATTCTGGGTCAAA 829 >seq2745 Length=20976 Score = 304 bits (336), Expect = 1e-77 Identities = 549/798 (69%), Gaps = 6/798 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| ||||||||||| |||||||| ||||| | | |||||||| || || | | || Sbjct 4347 ATCGGCTACAAATTCAATGTACTGGGACATGAGCTGGCAATTCATGCCCAGCATATCCAC 4288 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || || || || || | ||| || | || ||| || ||||| | |||||| || Sbjct 4287 TGGAAGGGCATCAGTGAGGAATTCCTGTTCAATTGTCACAGCTTCACGGATGATTTCGAT 4228 Query 93046 TACTCTACTATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACGCAAAGTCGG 93104 | | || |||| || || || || | || ||| |||| || || |||||||| Sbjct 4227 GATGCG-CTCCTTGGAGGGCTTCTGCACCAGATGCTTGAACATCAAACAGGCAAAGTCAC 4169 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 || || ||||| || || || |||| ||| || |||||| | || || | | | Sbjct 4168 AGTGCAATCCTTCATCGCGAGAGATCAGCTCGTTTGAGAATGTGAGTCCGGGCATGATGC 4109 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | ||| |||||||| || |||||||| || || || || || || || || || | Sbjct 4108 CACGTGATTTGAGCCAGAAGATTGAAGCGAAGCTTCCGCTGAAGAAAATGCCCTCAACAG 4049 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAG 93284 ||||||| || | | |||||| |||| || || | |||| ||||| | | || Sbjct 4048 CTGCAAAGGCAATCACACGTTCCCCAAAGTTAGCTTCCTGACTGGCAATCCACTGCAGAG 3989 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||||| || || ||||| | ||| || || || || || || || || ||| | ||| Sbjct 3988 CCCAATCTGCCTTCTTCTTGACACAGGGCAGCGTCTCAATGGCATTGAACAGGAACTCTT 3929 Query 93345 GCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACAT 93404 ||| | | ||| || ||||| || || || | |||| ||||| ||| || |||| Sbjct 3928 TCTCTTGAGGATCCCGGATGTACGTGTCAATCAGCAGACTGTACATCTCACTGTGCACAT 3869 Query 93405 TCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG 93464 ||||||| ||||| || || || ||||| ||||||| || || || ||||| || ||| Sbjct 3868 TCTCCATGGCAATCTGAAAGCCATAGAAGAATCTAGCCTCGGTTATTTGCACCTCCTGAC 3809 Query 93465 AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATA 93524 || | ||| || ||||| |||||||| || |||||||| || || || |||||||| | Sbjct 3808 TGAAGCGCTCCACCAGATTCTCATTGACAATCCCATCGGAAGCGGCGAAGAAAGCCAACA 3749 Query 93525 TATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT--AGATCTTT 93582 || || || | ||||| ||| || || || ||| | ||| | |||| Sbjct 3748 CGTGGGAAATGAACTTCCTCTCACAATCCTTCAGTGCATTCCAGT--GATCAATATCTCG 3691 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 || ||||| || || || || ||||| || || ||||| |||| ||||||||| ||||| Sbjct 3690 GGATAGATCCACCTCCTCTACCGTCCAGAAGGACGCTTCAGCTTGTTTGTACATCTCCCA 3631 Query 93643 TATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGG 93702 ||||| || || ||||| ||||||| || || | | || || || | || || || Sbjct 3630 GATGTCATGGTACTGAATAGGAAATACCACGAATCTCCTGGGATTCTCCCTGAGCAAGGG 3571 Query 93703 CTCTAGTTGTGGGTCAAA 93720 ||| | || ||||||||| Sbjct 3570 CTCCAATTCTGGGTCAAA 3553 >seq4085 Length=11647 Score = 123 bits (136), Expect = 3e-23 Identities = 92/107 (86%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1615 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1556 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||||||||||||||||||||| | | || || ||||| ||| Sbjct 1555 TGGGTTCGAACCCCACACCTGACAGACTGTTTTTCTCCTTTTTTTTG 1509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556117209852240