Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4578 174 1e-38 seq186 143 2e-29 seq18 127 2e-24 seq2952 104 2e-17 seq83690 95.1 1e-14 seq165 93.3 4e-14 >seq4578 Length=10518 Score = 174 bits (192), Expect = 1e-38 Identities = 483/732 (66%), Gaps = 13/732 (2%) Strand=Plus/Plus Query 129128 TTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCT 129187 || |||| || || ||||| | | || ||||| ||| |||||| ||| | || | Sbjct 3553 TTCTTACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTT 3612 Query 129188 CAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC-- 129245 | || |||||||| ||||||| || || ||||||| || || ||||| || || Sbjct 3613 CGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCA 3672 Query 129246 GCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCA 129305 |||| ||| || | || ||| || || ||| | | |||| | ||| | ||| Sbjct 3673 GCAA--CGAATTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCA 3730 Query 129306 CATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACT 129365 || || ||| | | | ||||| ||||| || | |||||| || | |||| Sbjct 3731 CAAATCCGTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACA 3790 Query 129366 GGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAAT 129423 ||| | |||| || |||||| | |||||||||||||| || ||||| Sbjct 3791 TCCTGCGTACGTCTCGTAGGGTCC--AAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAG 3848 Query 129424 GCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACT-TTGGCCTGGTCGCTTTC 129482 || ||| | || || || ||| |||| | || | | | ||||||| ||||| || Sbjct 3849 GCACCATAGTAGATGGTCTCGAAGATTT-GCTGATTGAGTTTCTTGGCCTCTTCGCTATC 3907 Query 129483 GTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGG 129542 || |||| ||||| || || | || || | ||| |||| || | || || || Sbjct 3908 ATAGGGCAGACGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGG 3967 Query 129543 TCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAAT 129602 | ||| | ||||||| || ||| || |||||||||||||||||| || | Sbjct 3968 CCTGTGTCTCATATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGAC 4027 Query 129603 TTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTC 129662 |||||| ||||| ||||| |||||||| ||| | | ||||| | |||| Sbjct 4028 TTTGTTCAAATTGCGCGTAACAATCTTCGTTACTGCTTTGAGTTTCTCAAAGTCGTAC-- 4085 Query 129663 GCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACT 129722 | || ||| | || || ||||| | ||| || |||| |||||| || ||| | Sbjct 4086 GTCTT-ATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAAT 4144 Query 129723 TTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCC 129782 || | ||| || || |||||||| | ||||||||| ||| ||| || || Sbjct 4145 CTCATCCTTGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCC 4204 Query 129783 CAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCC 129842 | || || |||||||| ||| ||||||| ||||||||||||| |||||||||||| || Sbjct 4205 AATATTCTGCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCC 4264 Query 129843 CGTTTCGACTTG 129854 ||||| ||||| Sbjct 4265 AGTTTCCACTTG 4276 Score = 150 bits (166), Expect = 2e-31 Identities = 478/732 (65%), Gaps = 13/732 (2%) Strand=Plus/Plus Query 129128 TTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCT 129187 || |||| || || ||||| | | || || || ||| |||||| ||| | || | Sbjct 6880 TTCTTACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTT 6939 Query 129188 CAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC-- 129245 | || |||||||| ||||||| || || ||||||| || || ||||| || || Sbjct 6940 CGAAGGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCA 6999 Query 129246 GCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCA 129305 |||| ||| || | || || || || ||| | | ||||| | ||| | ||| Sbjct 7000 GCAA--CGAATTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCA 7057 Query 129306 CATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACT 129365 || || ||| | | ||||| ||||| |||| |||||| || | |||| Sbjct 7058 CAAATCCGTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACA 7117 Query 129366 GGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAAT 129423 ||| | |||| || |||||| | |||||||||||||| || ||||| Sbjct 7118 TCCTGCGTATGTCTCGTAGGGTCC--AAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAG 7175 Query 129424 GCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACT-TTGGCCTGGTCGCTTTC 129482 || || | || || || ||| |||| | || | | | ||||| | ||||| || Sbjct 7176 GCACCGTAGTAGATGGTCTCGAAGATTT-GCTGATTGAGTTTCTTGGCTTCTTCGCTGTC 7234 Query 129483 GTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGG 129542 || |||| ||||| || || | || |||| ||| |||| || | || || || Sbjct 7235 ATAGGGCAGACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGG 7294 Query 129543 TCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAAT 129602 | || | ||||||| || ||| | |||||||||||||||||| || | Sbjct 7295 CCTGTGCCTCATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGAC 7354 Query 129603 TTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTC 129662 |||||| ||||| ||||| ||||| || ||| | | ||||||| |||| Sbjct 7355 TTTGTTCAAATTGCGCGTAACAATCTTCGTCACTGCTTTGAGTTTCTCAAAATCGTAC-- 7412 Query 129663 GCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACT 129722 | || ||| | || || ||||| | ||| || |||| |||||| || ||| | Sbjct 7413 GTCTT-ATCAGCCTTTACGAACATATTGAGAGCAATAGATGCCAGATTGCACACAGCAAT 7471 Query 129723 TTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCC 129782 || | ||| || || |||||||| | ||||||||| ||| ||| || || Sbjct 7472 CTCATCCTTGGACGAATATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCC 7531 Query 129783 CAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCC 129842 | || || ||||| || ||| ||||||| ||||||||||||| |||||||||||| || Sbjct 7532 AATATTCTGCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCC 7591 Query 129843 CGTTTCGACTTG 129854 ||||| ||||| Sbjct 7592 AGTTTCCACTTG 7603 >seq186 Length=148488 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | ||||| || || |||| |||||||| ||| | | Sbjct 13172 ATGCAAATTTTTGTCAAAACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAACCATCT 13231 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||| ||||||||||| || || || || Sbjct 13232 GACACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCAG 13291 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||| | |||||| |||||| | ||||| |||||| Sbjct 13292 CAACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGTCCGACTACAAC 13351 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||||| || || || | || ||||| Sbjct 13352 ATCCAGAAGGAGTCTACCCTTCATTTGGTCTTACGTCTCCGTGGAGG 13398 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||||||| | ||||| || || | ||||| ||||| ||| | | Sbjct 13854 ATGCAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCT 13913 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| || ||||| || || || || ||||| || || || Sbjct 13914 GATACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 13973 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| | |||||| ||| ||| | || || |||||| Sbjct 13974 CAACGTTTGATTTTTGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCGGACTACAAC 14033 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||| ||| | ||| | || |||| Sbjct 14034 ATCCAGAAGGAATCAACCCTTCATCTTGTGCTGCG 14068 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| |||||||| || |||||||||| || || || | Sbjct 12944 ATGCAGATCTTTGTGAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGCCCTCT 13003 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| || |||||||| ||||| || || || Sbjct 13004 GATACGATTGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAG 13063 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| || | || ||| || ||| | || || |||||| Sbjct 13064 CAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTTTCTGACTACAAC 13123 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || ||| | ||| | || ||||| Sbjct 13124 ATTCAGAAGGAGTCTACCCTCCATCTTGTCTTGCG 13158 >seq18 Length=974545 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || ||| | || || ||||| |||| | || |||||| || Sbjct 449444 AAAATGCAGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAACCC 449503 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | ||| ||| ||||| ||||||||||| ||||| || ||| Sbjct 449504 TCAGATACCATTGAAAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGAT 449563 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || |||||||| || ||| | |||||| ||| || | || |||||| Sbjct 449564 CAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGGATTAC 449623 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || |||| | ||| | || ||||| Sbjct 449624 AATATCCAGAAGGAGAGCACCCTGCATCTCGTGTTGCG 449661 >seq2952 Length=20052 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||||||||| |||| ||| || | || || || |||||||||| |||||||| || Sbjct 6241 TTGTCCACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCCG 6300 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||||| || ||||| | || | ||| || | || | |||| ||||| Sbjct 6301 GTTTTCAGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGGT 6360 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | || |||| || ||||| ||||| || |||||||||| || || || || ||| Sbjct 6361 TCTGCCACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCC 6420 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTC 129008 || | |||| | ||||| || || ||||| || || ||||| ||||| Sbjct 6421 ATCTCGATCATGGTCTTCACCTTGATCTCCCAAACGGTCTTGTAGAGCTC 6470 >seq83690 Length=433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || ||| | || Sbjct 26 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCC 85 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || || |||||||| || || || || || || Sbjct 86 GATACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 145 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || || ||| ||| || | || || |||||| Sbjct 146 CAGCGTCTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACTCTTTCGGACTACAAC 205 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| |||||||| Sbjct 206 ATTCAAAAGGAATCCAC 222 >seq165 Length=164173 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || |||| || | ||||| |||| | ||||| ||| || | Sbjct 30569 ATGCAGATCTTTGTGAAGACTT--ACGGAGAAAACCATCACATTGGAAGTAGAACCCTCA 30512 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | || || | | ||| ||||| ||||||||||| ||| | || |||||| Sbjct 30511 ATAACCATTGAAAATGTGATTGCAAAGATTCAGGACAAGGAGGGAATTTCTCCAGATCAA 30452 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| || |||||||| || ||| | ||||| || || |||| || ||||| Sbjct 30451 CAGCATCTGATCTTTGCCGGAAAGCAGCTTAAGGATGGCCATACACTCTCGGACTACAAT 30392 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || |||| | ||| | || ||||| Sbjct 30391 ATTCAGAAGGAGAGCACCCTCCATCTCGTGTTGCG 30357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419181538540690