Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq35959 129 1e-24 seq109 96.9 7e-15 seq4643 91.5 3e-13 seq43 91.5 3e-13 seq8 91.5 3e-13 >seq35959 Length=4883 Score = 129 bits (142), Expect = 1e-24 Identities = 334/504 (66%), Gaps = 10/504 (2%) Strand=Plus/Minus Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 || ||||| ||||| | |||||||||||| | ||||| |||||||| | | ||| Sbjct 1947 GAACGTTCGATTCCGTGTGTGGTGGATGGCTTGAAGCCGGGACAGCGTAAAGTGATTTTT 1888 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAA----TTAAGGTCGCTCAGTTTTCTGGTTA 218678 | |||||||| || || ||||||| ||||||| || || || |||||| Sbjct 1887 ACATGTTTCAAGCGCAA--TGA--CAAGAAAGAGGTTAAGGTTGCACAATTGGCTGGTTC 1832 Query 218679 TGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAG 218737 || | || | || | ||| || || |||||||||||||| | | | ||||||| Sbjct 1831 AGTGGCTGAGAAGTCAGCCTATCACCATGGTGAGCAGAGTCT-CTGTTCGACCATTGTCA 1773 Query 218738 GCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGT 218797 |||| ||| | ||||| ||||| || || || || | || | || || ||||| | Sbjct 1772 ATCTGGCTCAGAATTATGTTGGCAGCAATAATATCAATCTCCTTCAGCCAAATGGTCAAT 1713 Query 218798 TTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGT 218857 | || | | || ||||| ||||||||||| ||| || | || ||||| || | | Sbjct 1712 TCGGCACGAGACTCAATGGTGGCAAGGATAGTGCATCTCCCCGTTACATCTTCACGATGC 1653 Query 218858 TGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTG 218917 | |||||| || | || | | | ||| ||| | ||| ||| |||||| |||| | Sbjct 1652 TCTCGCCCCTGGCTCGACTGATTTTCCATCCGCACGACGATCCTCTCCTTCAGTACCAAA 1593 Query 218918 AGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCG 218977 ||||||| | ||||| || | ||||| | || ||||| | | || | Sbjct 1592 AGGACGACAATCAGGACATTGAACCAGTCTGGTACCTACCCATCATTCCCATGGTACTTG 1533 Query 218978 TAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCA 219037 ||||||||||| | || || || ||||| | || | ||||| |||||||| | Sbjct 1532 TAAATGGTGCCGAGGGCATAGGAACAGGCTGGTCCACAAAGATTCCAAACTACAATCCAA 1473 Query 219038 AGGACATCATTGACAACGTCAAGC 219061 ||| |||||| ||| ||| || Sbjct 1472 GGGAGATCATTAGCAATCTCAGGC 1449 >seq109 Length=262678 Score = 96.9 bits (106), Expect = 7e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 93409 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 93350 Query 142561 AGCCCCACATCGGGC-AGAA 142579 |||||||| | |||| |||| Sbjct 93349 AGCCCCACGTTGGGCGAGAA 93330 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 91836 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 91895 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 91896 CCCCACGTTGGGC 91908 >seq4643 Length=9238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 5126 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 5067 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 5066 CCCCACGTTGGGC 5054 >seq43 Length=664642 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 71837 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 71778 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 71777 AGCCCCACGTTGGGC 71763 >seq8 Length=1271708 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 |||| || |||||| |||||||||||||||||| ||||||||||||| |||||||| Sbjct 1241460 GTGACAT-GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGG 1241402 Query 142556 GTTCGAGCCCCACATCGGGC 142575 ||||||||||||| | |||| Sbjct 1241401 GTTCGAGCCCCACGTTGGGC 1241382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026429991420666