Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq186 159 6e-34 seq83690 150 3e-31 seq18 150 3e-31 seq165 113 8e-20 seq7442 105 1e-17 seq60870 93.3 8e-14 seq7722 91.5 3e-13 seq2745 84.2 4e-11 >seq186 Length=148488 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || || || | ||| || || ||||| || |||||||| || || ||||| || | Sbjct 13843 AGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGG 13784 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| ||||| |||||||| || || | | || || || ||||| || |||||| Sbjct 13783 CCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCC 13724 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| ||| || ||||| | | || ||||| | || Sbjct 13723 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTA 13664 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| |||||||||||||| || |||||||| Sbjct 13663 ATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 116 bits (128), Expect = 7e-21 Identities = 153/208 (74%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||| || ||||| || || || || || || | |||||||| | Sbjct 13605 CAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGACCATCTTCAA 13546 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| ||||| || || | | |||||||| ||||| || || ||||| || |||| Sbjct 13545 GTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTATCCTGAA 13486 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || ||||| ||| || || || || | | ||| || || | ||| ||||| |||| Sbjct 13485 T-TTGGCCTTCACGTT-TCAATAGTATCAGAAGGTTCGACCTCAAGGGTAATGGTCTTTC 13428 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||||||||| || |||||||| Sbjct 13427 CGGTAAGGGTCTTGACAAAGATCTGCAT 13400 >seq83690 Length=433 Score = 150 bits (166), Expect = 3e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| || ||||| ||||| || || || || || | |||||||| | Sbjct 233 CAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCA 174 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | ||||| || ||||| || || | || ||||| || || || ||||||||||| || | Sbjct 173 ATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGA 114 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||||||| ||| || || || | | ||| || || | ||||||||| || | Sbjct 113 TCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGC 54 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||||| || |||||||| Sbjct 53 CAGTGAGGGTCTTGACAAAGATCTGCAT 26 Score = 113 bits (124), Expect = 8e-20 Identities = 133/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 68283 TTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGT 68342 || ||||| || || || | |||||||| | ||||| ||||| || || | | || Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || || || ||||||||||| ||||| || |||||||| ||| |||||||| Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCA 312 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | || ||||| | || |||| | |||| || ||||||||||| || |||||||| Sbjct 311 GAGGGCTCAACTTCGAGAGTAATGG-TCTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 254 >seq18 Length=974545 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || ||| ||| || ||||| || ||||| || Sbjct 449673 CCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGAC 449614 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || | |||||| ||||| || || | | || || || || ||| Sbjct 449613 AGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGA 449554 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| ||||||||||| || || || ||||| |||| | ||| || Sbjct 449553 ATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACC 449494 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||||||||||||||| ||||| || ||||| || || ||||||||| || Sbjct 449493 TCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTTG 449443 >seq165 Length=164173 Score = 113 bits (124), Expect = 8e-20 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || ||||| || | || || ||| ||| || || || || || || |||||||| Sbjct 30354 AGACGCAACACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGG 30413 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| | | |||||| ||||| || || || ||||| || || | ||| || ||| Sbjct 30414 CCATCCTTAAGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCC 30473 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| ||||||||||| | || || ||||| || | |||||||||||| ||| Sbjct 30474 TTGTCCTGAATCTTTGCAATCACATTTTCAATGGTTATTGAGGGTTCTACTTCCAATGTG 30533 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| |||| | ||||| || || ||||||||| Sbjct 30534 ATGGTTTTCTCCGTAA--GTCTTCACAAAGATCTGCATT 30570 >seq7442 Length=2102 Score = 105 bits (116), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 13/227 (6%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || ||||| |||||||| || || || ||||| ||| Sbjct 1804 CCACCACGAAGGCGAAGCACAAGATGCAGCGTTGACTCTTTCTGAATTTTGTAATCAGAG 1863 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||||| ||||| || || || || | | ||| || || ||||| Sbjct 1864 AGGGTACGTGCATCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGG 1923 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| | ||||||| || || || |||||||| || | | || || Sbjct 1924 ATGCCCT---------GAATCTTAGCTTTAACATTTTCGATGGTATCAGAAGGCTCCACC 1974 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||||||||| || || ||||| || ||||| Sbjct 1975 TCGAAGGTGATTGTTTTTCCCGT----GTTTTCACGAAGATTTGCAT 2017 >seq60870 Length=785 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 || || |||||||| || | |||| || || || |||||||| || || || ||||| || Sbjct 748 CCACCACGAAGGCG-AAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGA 690 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||||||||| ||||| || || || || | | ||| || || ||||| Sbjct 689 AAGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGG 630 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 ||||| || || || |||||||| || || || Sbjct 629 GATGCCCTCTTTATCCTGAATCTTGGCTTTAAC 597 >seq7722 Length=1803 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 || || |||||||| || | |||| || || || |||||||| || || || ||||| || Sbjct 143 CCACCACGAAGGCG-AAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGA 85 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||||||||| ||||| || || || || | | ||| || || ||||| Sbjct 84 AAGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGG 25 Query 68354 AATGCCTTCCTTGTCTTGAATCTT 68377 ||||| || || || |||||||| Sbjct 24 GATGCCCTCTTTATCCTGAATCTT 1 >seq2745 Length=20976 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATT---CATGACGCCCGCCTT 9949 |||||| |||||||| |||| || || ||||| | || ||||||||| || || Sbjct 4586 TTAGAAATCTGCGTCCATTGTGAAGACATTGTCCATGCGATCAGCCATGACGCCAGCTTT 4527 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 ||| ||||| ||| |||||||||||| | |||||| |||||||| |||| || Sbjct 4526 CTGATACTCTCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTCGAGGGAGATGAATTC 4467 Query 10010 CATGAAGTCAAAGGGGTTCT 10029 ||||||| ||||| |||| Sbjct 4466 CATGAAGCTGAAGGGATTCT 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920391734568720