Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq83690 120 3e-22 seq186 114 1e-20 seq18 113 4e-20 >seq83690 Length=433 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| |||||||||||||| || Sbjct 255 ATACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCC 196 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||| || |||||| |||| |||||||| ||||| ||| Sbjct 195 GAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGA 136 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | |||| || |||| | |||| Sbjct 135 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCG 76 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | || ||||| || || || || ||||| ||||||||| || Sbjct 75 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCT 22 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/179 (71%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 114204 TTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGT 114263 |||||||| | ||||||| |||||||||||| || || || |||| | |||||| Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 114264 TGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCG 114323 ||||| ||||| || ||||| ||||| ||| || || | | |||| |||||| Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCA 312 Query 114324 GTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || || | || | || || ||||| || || || ||||| |||||||| Sbjct 311 GAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 >seq186 Length=148488 Score = 114 bits (126), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 114152 AATA-CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | || || | ||| | || ||||| || || |||||||| | Sbjct 14085 AATATCCACCACGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGT 14026 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | ||||| ||| ||||||||||| ||||| | || | ||| || ||||| | Sbjct 14025 CCGAAAGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTG 13966 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 ||||||| |||||||| || |||||| ||| | | ||||| || || | | || Sbjct 13965 GAGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTT 13906 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || |||| || | || || |||||||||||||| || ||||| |||||| Sbjct 13905 CAACTTCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || | ||| | ||||| || || ||||||||||| || Sbjct 13173 ATTCCACCACGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCA 13114 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||||||| || ||||| | || |||||||| ||||| || Sbjct 13113 GAAAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGG 13054 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || |||||| || | | |||| || || | || ||| Sbjct 13053 GGAATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCG 12994 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||||| ||| || ||||| |||||||| Sbjct 12993 ACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 12944 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||||| || || || || ||||| || Sbjct 13627 ATACCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCA 13568 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||||||||| || || || |||| | ||||||||||||||| Sbjct 13567 GACAGGGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGT 13508 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || || ||| | || | ||||| || || | | |||| Sbjct 13507 GGGATCCCCTCCTTATCCTGAA--TTTGGCCTTCACGTTTCAATAGTATCAGAAGGTTCG 13450 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | || || ||||| || || || ||||| ||||||||| || Sbjct 13449 ACCTCAAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCATGCCT 13396 >seq18 Length=974545 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || | ||| | || || || || || |||||||| Sbjct 449676 ATGCCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCC 449617 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||| ||||| || || || || |||| | |||||| || |||||| Sbjct 449616 GACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGA 449557 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||||| ||| | | ||||| ||| || | || ||| Sbjct 449556 GGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCC 449497 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || ||||| || ||||| |||||||| Sbjct 449496 ACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCAT 449447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419587409431512