Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2745 253 4e-62 seq26202 237 3e-57 seq4578 132 9e-26 >seq2745 Length=20976 Score = 253 bits (280), Expect = 4e-62 Identities = 428/613 (70%), Gaps = 15/613 (2%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| ||||||||||| || || || || ||||||||||| |||| | |||| Sbjct 3752 TGGCTTTCTTCGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCTTCAGTC 3811 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 | |||||||| ||||| | | |||||| ||||| ||||| ||||| ||||| | Sbjct 3812 AGGAGGTGCAAATAACCGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGGAGAATG 3871 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600 ||||| |||| ||||| | ||||| | |||||||||||| |||||| || || Sbjct 3872 TGCACAGTGAGATGTAC---AGTCTGCTGATTGACACGTACATCCGGGATCC--TCAAGA 3926 Query 42601 GTAACGGG--CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | || | |||||||| ||||| |||||| ||||||| ||||||||||||| || || Sbjct 3927 GAAAGAGTTCCTGTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAAGAAGGCAGATTG 3986 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||| || | ||||| | |||| || || | || || || | || | |||||| | Sbjct 3987 GGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGTGATTGCCTTTGC 4046 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC-AAGCAGA 42777 || || |||||||| |||||| || |||||| || |||||||||||| || || Sbjct 4047 AGCTGTTGAGGGCATTTTCTTCAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAAATCACG 4106 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || |||||||||||||| ||||| ||||| || ||| | || || || ||| Sbjct 4107 TGGCATC-ATGCCCGGACTCACATTCTCAAACGAGCTGATCTCTCGCGATGAAGGATTGC 4165 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | ||||||||||| | ||||| | || || ||| |||||||| ||||||| Sbjct 4166 ACTGTGACTTTGCCTGTTTGATGTTC---AAGCATCTGGTGCAGAAGCCCTCCAAGGAGC 4222 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 | || | |||||| || || ||| || || |||| |||||||| | | | Sbjct 4223 GCATCATCGAAATCATCCGTGAAGCTGTGACAATTGAACAGGAATTCCTCACTGATGCCC 4282 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | || ||| || | |||||||| | | ||||||| | ||||||| | | || | Sbjct 4283 TTCCAGTGGATATGCTGGGCATGAATTGCCAGCTCATGTCCCAGTACATTGAATTTGTAG 4342 Query 43018 CCGACCATCTCCT 43030 |||| | ||| || Sbjct 4343 CCGATCGTCTACT 4355 >seq26202 Length=13276 Score = 237 bits (262), Expect = 3e-57 Identities = 410/590 (69%), Gaps = 17/590 (3%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| ||||| ||||| || || || || ||||||||||| |||| | |||| Sbjct 1028 TGGCTTTCTTTGCCGCTTCCGATGGGATTGTCAATGAGAATCTGGTGGAGCGCTTCAGTC 1087 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 | |||||||| ||||| | | |||||| ||||| ||||| ||||| ||||| | Sbjct 1088 AGGAGGTGCAAATAACAGAGGCTAGATTCTTCTATGGCTTTCAGATTGCCATGGAGAATG 1147 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600 ||||| |||| ||||| | ||||| | |||||||||||| |||||| ||| Sbjct 1148 TGCACAGTGAGATGTAC---AGTCTGCTAATTGACACGTACATCCGGGATCCGCAGGAG- 1203 Query 42601 GTAACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | | || ||||| ||||| |||||| ||||||| ||||||||||||| || | Sbjct 1204 --AAAGAGTTCCTCTTCAATGCCATTGAGACGCTGCCCTGTGTCAAGAAGAAGGCAGATT 1261 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| || | ||||| | |||| || || | || || || | || | |||||| Sbjct 1262 GGGCTCTGCAGTGGATTGCCAGTCAGGAAGCTAACTTTGGGGAACGTGTGATTGCCTTTG 1321 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC-AAGCAG 42776 | || || |||||||| ||||| || |||||| || |||||||||||| || || Sbjct 1322 CAGCTGTTGAGGGCATTTTCTTTAGCGGAAGCTTCGCTTCAATCTTCTGGCTCAAATCAC 1381 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || |||||||||||||| ||||||||||| || ||| | || || || || Sbjct 1382 GTGGCATC-ATGCCCGGACTCACATTCTCGAACGAGCTGATCTCTCGCGATGAAGGTTTG 1440 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | ||||||||||| | ||||| | || || ||| |||||||| |||||| Sbjct 1441 CACTGTGACTTTGCCTGTTTGATGTTC---AAGCATCTGGTGCAGAAGCCCTCCAAGGAG 1497 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | |||||| || || ||| || || |||| |||||||| | | Sbjct 1498 CGCATCATCGAAATCATCCGCGAAGCTGTGACAATTGAACAGGAATTCCTCACTGATGCC 1557 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACAT 43006 || || ||| || | |||||||| | | ||||||| | ||||||| Sbjct 1558 CTTCCAGTGGATATGCTGGGCATGAATTGCCAGCTCATGTCCCAGTACAT 1607 >seq4578 Length=10518 Score = 132 bits (146), Expect = 9e-26 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 244969 CGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGAT 245028 ||| ||||| | |||||| || || | || || |||||||| || || || ||||| Sbjct 7733 CGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCATAAACAGATCCGGGAT 7792 Query 245029 CCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC-TGC-TCGTCCGAGCCAGTGTTCTTCCTC 245086 ||| || || | ||| || ||||| | ||| ||| | ||| ||| || |||||| | Sbjct 7793 CCACAGAGCATAGAACAGATCCCTTG--CTCGTGCCTTCTCCTTGCCCGTATTCTTCTTG 7850 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || |||||||| ||||||| ||| ||||||||||||||| ||||| ||| | ||| ||| Sbjct 7851 AGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGGCACCG 7910 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || |||||||| || ||||| || || Sbjct 7911 GGACGCTTGTTCCCACCCTGATCAAC 7936 Score = 127 bits (140), Expect = 4e-24 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 244969 CGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGAT 245028 ||| ||||| | |||||| || || | || || |||||||| || || || ||||| Sbjct 4406 CGGACACATCAAACTCCATTCCCCATCTTCAGATACTCTCTGCATAAACAGATCCGGGAT 4465 Query 245029 CCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC-TGC-TCGTCCGAGCCAGTGTTCTTCCTC 245086 ||| || || | ||| || ||||| | ||| ||| | ||| ||| ||||||||| | Sbjct 4466 CCACAGAGCATAGAACAGATCCCTTG--CTCGTGCCTTCTCCTTGCCCGTGTTCTTCTTG 4523 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || |||||||| ||||| | ||| ||||||||||||||| ||||| ||| | ||| ||| Sbjct 4524 AGATCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTCCAGGTAGATAGCAAAGGCACCG 4583 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || |||||||| || || || || || Sbjct 4584 GGACGCTTGTTCCCACCTTGATCAAC 4609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943078200257760