Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq83690 154 3e-32 seq186 129 1e-24 seq35959 105 2e-17 seq60870 93.3 1e-13 seq26202 86.0 1e-11 seq2745 86.0 1e-11 >seq83690 Length=433 Score = 154 bits (170), Expect = 3e-32 Identities = 173/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| ||| ||||| || || ||||| | Sbjct 252 CCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAA 193 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| ||||| ||||| ||||||||||||||||| || ||||| Sbjct 192 AGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGG---TCTGGA 136 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||| || |||||||| || || || ||||| || |||| |||| | ||| Sbjct 135 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCG 76 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || |||||||| || |||||||| Sbjct 75 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Score = 100 bits (110), Expect = 7e-16 Identities = 134/184 (73%), Gaps = 7/184 (4%) Strand=Plus/Minus Query 288293 TATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCT 288352 |||| || || | || || || || ||||| | ||| ||||| || ||||||| ||||| Sbjct 433 TATTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCT 374 Query 288353 GTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAG 288409 | || ||||| ||||||||| || ||||| ||||| || || || || || || | Sbjct 373 GCTGG---TCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGG 317 Query 288410 AATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCT 288469 || | || |||||||| || || ||||| ||||| || |||||||| || |||| Sbjct 316 TGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCT 258 Query 288470 GCAT 288473 |||| Sbjct 257 GCAT 254 >seq186 Length=148488 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || || ||||| || ||||| || || ||| Sbjct 13816 TCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAG 13757 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| ||| |||||||||||| || |||||||| || || || ||||| Sbjct 13756 ATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 13697 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || | || |||||||| || || ||||| || || || |||||||| Sbjct 13696 TCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACA 13637 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 13636 AAGATCTGCAT 13626 Score = 125 bits (138), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | || || ||||||| || ||| || ||||| || ||||| Sbjct 14084 ATATCCACCACGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTC 14025 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | || || || || || || | |||||| || || || |||| ||| || || || Sbjct 14024 CGAAAGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGG---TC 13968 Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 ||| ||||||||||||||||| || || ||||| || ||||| || | ||| | Sbjct 13967 TGGAGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGG 13908 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| || || || ||||| ||||||||||| || ||||| || ||||| Sbjct 13907 TTCAACTTCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 104 bits (114), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | | || ||||| | || || || || || || ||||| | Sbjct 13171 TCCACCACGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGA 13112 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | ||| || || || || ||||||||||| || ||||| Sbjct 13111 AAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTG---GTCTGG 13055 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || |||||||| || || || ||||| || || || | ||| | || Sbjct 13054 GGGAATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTC 12995 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| ||||||| |||||| || || ||||||||| Sbjct 12994 GACCTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATT 12943 >seq35959 Length=4883 Score = 105 bits (116), Expect = 2e-17 Identities = 181/258 (70%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TTGATGT 325400 |||||| ||||| | | ||||| ||||| || || | ||| || || ||||| | Sbjct 1684 ATCCTTGCCACCATTGAGTCTCGTGCCGAATTGACCATTTGGCTG-AAGGAGATTGATAT 1742 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCT--TC 325458 ||||||| || ||||||| ||| || || || || |||||| |||||| || || Sbjct 1743 TATTGCTGCCAACATAATTCTGAGCCAGATTGACAATGGTCGAA--CAGAGACTCTGCTC 1800 Query 325459 GCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC 325518 |||||||||||||| | ||| || || |||| || ||||||||||| || || Sbjct 1801 ACCATGGTGATAGGCTGACTTCTCAGCCACTGAACCAGCCAATTGTGCAACCTTAACCTC 1860 Query 325519 GGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 325578 || | ||||||||||||| || | | |||||||| || || || || || || Sbjct 1861 TTTCTTGTCATTGCGCTTGAAACATGTAAAAATCACTTTACGCTGTCCCGGCTTCAAGCC 1920 Query 325579 ATCAACGACCGACGGAAT 325596 ||| || || ||||||| Sbjct 1921 ATCCACCACACACGGAAT 1938 >seq60870 Length=785 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||| | || ||||| || ||||| || || | Sbjct 748 CCACCACGAAGGCGAAGAACAAGATGCAGTGTTGACTCTTTCTGAATATTGTAATCAGAA 689 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||||||||| ||||| || || || | ||| || ||| |||| Sbjct 688 AGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGG 629 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || || ||||||||||| || || ||||| || |||||| Sbjct 628 ATGCCCTCTTTATCCTGAATCTTGGCTTTAACATTTTCT 590 >seq26202 Length=13276 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 ||||| ||||||||||||||| ||| |||||| | || || |||||||| ||||||||| Sbjct 1713 TACAACTCGAAGAATCCCTTCAGCTTCATGGAATTCATCTCCCTCGAAGGCAAGACGAAC 1772 Query 269296 TTCTTCGAAAAG 269307 |||||||| ||| Sbjct 1773 TTCTTCGAGAAG 1784 >seq2745 Length=20976 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 ||||| ||||||||||||||| ||| |||||| | || || |||||||| ||||||||| Sbjct 4437 TACAACTCGAAGAATCCCTTCAGCTTCATGGAATTCATCTCCCTCGAAGGCAAGACGAAC 4496 Query 269296 TTCTTCGAAAAG 269307 |||||||| ||| Sbjct 4497 TTCTTCGAGAAG 4508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178039797438028