Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq186 138 1e-27 seq4578 120 3e-22 seq83690 95.1 1e-14 seq18 91.5 1e-13 seq2952 89.7 5e-13 >seq186 Length=148488 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || ||||| || || |||||||| || | | ||| || | || Sbjct 14065 AGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCC 14006 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || || ||| |||| | || |||||||| ||||||||||||||||| || Sbjct 14005 TCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATCC 13946 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| ||| || | ||||||| | || ||||| | ||| | || Sbjct 13945 TGAATCTTG-GCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGT 13887 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||||| |||||| |||||||||||||| Sbjct 13886 CTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || ||||||||||| || | | ||| || | |||||| Sbjct 13152 ACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATCTTCA 13093 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || |||||||| ||| |||| || ||||||||||| || ||||| || || || || || Sbjct 13092 AGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTGA 13033 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| ||| ||| | |||||| || || || || | ||| | |||||| Sbjct 13032 ATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACCTCAAGAGTGATGGTCTTA 12973 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATTTTAA 64448 ||||||||||| || || || || |||||| ||| Sbjct 12972 CCGGTCAAAGTCTTCACAAAGATCTGCATTCTAA 12939 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| || | ||||| || || || || || |||||||| || | | |||||| | | Sbjct 13384 TAAG-ACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCAT 13326 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 | || ||||||||||| || ||||||| || |||||||| || || || || || || | Sbjct 13325 CCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTAT 13266 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 |||| || || ||| ||| ||| | || ||| | || ||||| | || | || Sbjct 13265 CTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGG 13206 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| ||||| | ||||| || |||||||||||| Sbjct 13205 TCTTTCCGGTAAGGGTTTTGACAAAAATTTGCATT 13171 >seq4578 Length=10518 Score = 120 bits (132), Expect = 3e-22 Identities = 637/1016 (63%), Gaps = 23/1016 (2%) Strand=Plus/Plus Query 154024 TTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGA 154083 |||| || || || |||| | ||| || || |||| ||| ||| | || |||| Sbjct 3556 TTACCTGGAATTCACCGGAGAGTACTCGCCGGTTGTACATGTTGGATGTGTAGGGTTCGA 3615 Query 154084 ACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACA 154143 | ||||| || ||||||| || || || || | ||||| ||||| || |||| || Sbjct 3616 AGGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCA 3675 Query 154144 AAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGT 154203 | || || | || ||| |||| ||||| |||| || ||||||||||||| | Sbjct 3676 ACGAATTCCTCACACCATGTTGGGCAATTTTTGCCTTTAGCTCATCCCAATTCCACAAAT 3735 Query 154204 TGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCAC 154263 || |||| | || |||||| ||||| || | | |||| ||| | |||| | Sbjct 3736 CCGTTGGTTTCTTGTCCCACATCTCGTACTGAAGGATACCCTTGCTCACTGGACATCCTG 3795 Query 154264 TATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCAT 154323 || | ||| || || | | ||||| ||||||||||| || || || ||| Sbjct 3796 CGTACGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTGGCCTCCAAGGCACCAT 3855 Query 154324 AGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCA 154383 |||| | ||| ||| ||||| | || | | ||||| | || || || || |||| Sbjct 3856 AGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCCTCTTCGCTATCATAGGGCA 3915 Query 154384 ATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTT 154443 | || | | |||||||| || || || |||| || | |||| || |||||| Sbjct 3916 GACGCATCAAAATGAAAGCATCCGCTAGACCCTGAACCCCAATCCCAATTGGCCTGTGTC 3975 Query 154444 TTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTA 154503 | | ||| || |||||| | || ||||| || ||||| ||||| | ||| || | Sbjct 3976 TCATATTGGACAATTTGGCCTCTGGCACGGGATAGTAGTTGATGTCGATGACTTTGTTCA 4035 Query 154504 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCAAACAC----TCCG 154559 | |||| || || || | Sbjct 4036 AATTGCGCGTAACAATCTTCGTTACTGCTTTGAGTTTCTCAAAGTCGTACGTCTTATCAG 4095 Query 154560 CTTTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCA--G 154617 | |||| || | ||| | | | ||| |||| ||||| || ||||| || || | Sbjct 4096 CCTTTACGAACAT-ATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTG 4154 Query 154618 AACTACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTT 154677 || | | ||| |||||||||| ||||||||| || || ||||| || || | || | Sbjct 4155 GACGAAT--ATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCT 4212 Query 154678 TCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCA 154737 |||||| || ||||||| || ||||||||||| |||||||| || || ||||||| Sbjct 4213 GCTGATTACTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCA 4272 Query 154738 CTTGGGTTTCAATAATTGTGCGAAACAGACTT--CGCGCCTCAACTTGACAAGTAAATCG 154795 |||| | | ||| || || || |||| | | ||| || | | || | | Sbjct 4273 CTTGACTCTGAATTAT--GGCAAACCAGAGATCCCTCGCAGGAATTCTCCTGATATACCT 4330 Query 154796 ATTTTCGCTCTCATATTGTTCGTACAGTT-TTTCAAACTCTAAACTGTACACGTCCGACA 154854 | ||| ||||||| | ||||| || || || ||| | | || || | | Sbjct 4331 ACCTTCCTTCTCATACTTCATGTACAATTCATTGAACTTCTCACCCCAGCA-ATCAAATA 4389 Query 154855 AACCGGGACAGCGGTCGGGACACATCAATGACCACATT--TCGTTTTGTTGTACGCGTTT 154912 | || |||| | | ||||||||||| || |||| | | || ||| | | Sbjct 4390 ATCCTGGACTCTGATTCGGACACATCAA--ACTCCATTCCCCATCTTCAGATACTCTCTG 4447 Query 154913 CATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGC 154972 |||||||| |||||| | ||||| ||| || |||| ||| | || | || |||| | Sbjct 4448 CATAAACAGATCCGGGATCCACAGAGCATAGAACAGATCCCTTGC--TCGTGCCTTCTCC 4505 Query 154973 --GCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTC 155026 |||| |||| ||| | || |||||| ||| | ||||| ||||||| ||||| Sbjct 4506 TTGCCCGTGTTCTTCTTGAGATCCAAAAACTCAAAAATGTCACCGTGCCAGGGCTC 4561 Score = 111 bits (122), Expect = 2e-19 Identities = 635/1016 (63%), Gaps = 23/1016 (2%) Strand=Plus/Plus Query 154024 TTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGA 154083 |||| || || || |||| | ||| ||||| |||| ||| ||| | || |||| Sbjct 6883 TTACCTGGAATTCACCGGAGAGTACTCGGCGGTTGTACATGTTGGATGTGTAGGGTTCGA 6942 Query 154084 ACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACA 154143 | ||||| || ||||||| || || || || | ||||| ||||| || |||| || Sbjct 6943 AGGATTCATTATTGCCTAGAATCTGGGCCGTTGAAGCTGTTGGCATTGGGGCAACCAGCA 7002 Query 154144 AAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGT 154203 | || || | || || |||| ||||| ||||| || ||||||||||||| | Sbjct 7003 ACGAATTCCTCACGCCATGTTGGGCAATTTTTGCCTTTAACTCATCCCAATTCCACAAAT 7062 Query 154204 TGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCAC 154263 || |||| | |||||| ||||| |||| | |||| ||| | |||| | Sbjct 7063 CCGTTGGTTTCTTTCCCCACATTTCGTACTGCAGGATACCCTTGCTCACTGGACATCCTG 7122 Query 154264 TATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCAT 154323 || | ||| || || | | ||||| |||||||| || || || || | | Sbjct 7123 CGTATGTCTCGTAGGGTCCAAGCTTCTCAGCCAATTCGCAACTTGCCTCCAAGGCACCGT 7182 Query 154324 AGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCA 154383 |||| | ||| ||| ||||| | || | | ||||||| || || || || |||| Sbjct 7183 AGTAGATGGTCTCGAAGATTTGCTGATTGAGTTTCTTGGCTTCTTCGCTGTCATAGGGCA 7242 Query 154384 ATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTT 154443 | || | | |||||||| || || || |||| || | |||| || ||||| Sbjct 7243 GACGCATCAAAATGAAAGCATCCGCCAGACCCTGAACCCCAATCCCAATTGGCCTGTGCC 7302 Query 154444 TTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTA 154503 | | ||| || |||||| | | ||||| || ||||| ||||| | ||| || | Sbjct 7303 TCATATTGGACAATTTGGCCTCTGGTACGGGATAGTAGTTGATGTCGATGACTTTGTTCA 7362 Query 154504 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCAAACAC----TCCG 154559 | ||||||| || || | Sbjct 7363 AATTGCGCGTAACAATCTTCGTCACTGCTTTGAGTTTCTCAAAATCGTACGTCTTATCAG 7422 Query 154560 CTTTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCA--G 154617 | |||| || | ||| | | | ||| |||| ||||| || ||||| || || | Sbjct 7423 CCTTTACGAACAT-ATTGAGAGCAATAGATGCCAGATTGCACACAGCAATCTCATCCTTG 7481 Query 154618 AACTACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTT 154677 || | | ||| |||||||||| ||||||||| || || ||||| || || | || | Sbjct 7482 GACGAAT--ATTCTACAATTTCTGTGCACAAATTGCTACAGCGAATTGTCCCAATATTCT 7539 Query 154678 TCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCA 154737 |||||| || ||||||| || ||||||||||| |||||||| || || ||||||| Sbjct 7540 GCTGATTGCTCTTCCTGTTGCACGCATCTTTGTACAACATGTACGGCGTCCCAGTTTCCA 7599 Query 154738 CTTGGGTTTCAATAATTGTGCGAA--ACAGACTTCGCGCCTCAACTTGACAAGTAAATCG 154795 |||| | | ||| || || || | ||| || ||| || | | || | | Sbjct 7600 CTTGACTCTGAATTAT--GGCAAACCAGAGATCTCTCGCAGGAATTCTCCTGATATACCT 7657 Query 154796 ATTTTCGCTCTCATATTGTTCGTACAGTT-TTTCAAACTCTAAACTGTACACGTCCGACA 154854 | ||| ||||||| | ||||| || || || ||| | | || || ||| Sbjct 7658 ACCTTCCTTCTCATACTTCATGTACAATTCATTGAATTTCTCACCCCAGCA-ATCAAACA 7716 Query 154855 AACCGGGACAGCGGTCGGGACACATCAATGACCACATT--TCGTTTTGTTGTACGCGTTT 154912 | || |||| | | ||||||||||| || |||| | | || ||| | | Sbjct 7717 ATCCTGGACTCTGATTCGGACACATCAA--ACTCCATTCCCCATCTTCAGATACTCTCTG 7774 Query 154913 CATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGC 154972 |||||||| |||||| | ||||| ||| || |||| ||| | || | || |||| | Sbjct 7775 CATAAACAGATCCGGGATCCACAGAGCATAGAACAGATCCCTTGC--TCGTGCCTTCTCC 7832 Query 154973 --GCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTC 155026 |||| | || ||| | || |||||| ||| | ||||| ||||||| ||||| Sbjct 7833 TTGCCCGTATTCTTCTTGAGATCCAAAAACTCAAAGATGTCACCGTGCCAGGGCTC 7888 >seq83690 Length=433 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/179 (72%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 64265 TTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGC 64324 |||||||| | | || || | |||||||| ||||| |||||| | || | |||||| Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 64325 TGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA 64384 ||||| ||||| |||||||| || || || ||||| ||| ||| ||| | || ||| Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCA 312 Query 64385 CCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| | ||| | |||||| ||||| | || || || || || ||||| Sbjct 311 GAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| |||||||||||||| || | | || || | ||| Sbjct 237 AGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCT 178 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || || | || || ||||||||||| ||||| |||||||| || || Sbjct 177 TCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 118 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | || || || | || | |||| Sbjct 117 TGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTC 58 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || || || || ||||| Sbjct 57 TTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 >seq18 Length=974545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCG--CGTCTTCAAGCTGCTTGCCGGCAT 64310 || || || || |||||||| |||| ||| || | || ||||||||||| |||||| Sbjct 449637 TCCTTCTGGATATTGTAATC--CGACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAA 449580 Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACA 64369 | || | |||||||| || ||||||||||| || || || || | | |||||||| ||| Sbjct 449579 AGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTG-AATCTTTGCTTTCACA 449521 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 || | ||||| || ||||| || | || | ||| || || || | ||| || Sbjct 449520 TTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTC 449461 Query 64430 ACGAAAATTTGCATTTT 64446 || || || |||||||| Sbjct 449460 ACAAAGATCTGCATTTT 449444 >seq2952 Length=20052 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 |||||||||||| ||| ||||||| || || ||||| || |||| || ||||| || Sbjct 6240 TTTGTCCACGGTGAATTGAATTGCATTGGCCGCTGGTTTGGTGCGCAGGTAGTACATTCC 6299 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGG 153790 |||||||| || | ||||| | || | ||| | | ||| | | || || |||| Sbjct 6300 GGTTTTCAGGCCCTGCTTCCAGGCGTAGAAGTGGATGGAAGTGAGTTTGCCGTAATTGGG 6359 Query 153791 CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 | || | | | ||| || ||||| ||||| || || || || || || || ||||| Sbjct 6360 TTCTGCCACGTAAATGTTGAATGACTGACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGC 6419 Query 153851 CATGTCAATCAAGTTTTTACTGCTCATTTCCCACACAGTTTTGTAGA 153897 ||| || |||| | | || | || ||||| || || ||||||| Sbjct 6420 CATCTCGATCATGGTCTTCACCTTGATCTCCCAAACGGTCTTGTAGA 6466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498977611807440