Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq186 86.0 6e-12 seq2952 84.2 2e-11 seq83690 82.4 8e-11 >seq186 Length=148488 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | ||| | | |||| ||||| || ||||||||||| Sbjct 14080 CCACCACGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAA 14021 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| |||||||| || | | | || | ||| || ||||| ||||| Sbjct 14020 AGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGA 13961 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | || | ||| | | ||| | || || | | || || Sbjct 13960 ATTCCTTCTTTATC-CTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAAC 13902 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || ||||||||||| || ||||| |||||| Sbjct 13901 TTCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| || || | || | | |||||||||| || ||||||||||| Sbjct 13853 GCCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 13794 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || | ||||| |||| | |||| | |||||| || || || || Sbjct 13793 GAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGG 13734 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 13733 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAAC 13674 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||| || || || ||||| |||||||| Sbjct 13673 TTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 >seq2952 Length=20052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCG-CCACGAGTA 152767 ||||| || || ||||||| || ||||| || ||||| ||||| | || ||| | ||| Sbjct 6268 GCCGCTGGTTTGGTGCGCAGGTAGTACATTCCGGTTTTCAGGCC-CTGCTTCCAGGCGTA 6326 Query 152768 ATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTG 152827 ||| || ||||| | |||| | |||| |||||| | | || || || || Sbjct 6327 GAAGTGGATGGAAGTGAGTTTGCCGTAATTGGGTTCTGCCACGTAAATGTTGAATGACTG 6386 Query 152828 GCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGTTTTGCCTTCAT 152887 ||||| || || || || ||||| ||||||||||| |||||| || |||| || Sbjct 6387 ACTCTGGTCAATAAAGGCTCCTCGGTCAGCCGCCATCTCGATCATGGTCTTCACCTTGAT 6446 Query 152888 CTCCCAGGCGGTTTTGTA 152905 |||||| |||| ||||| Sbjct 6447 CTCCCAAACGGTCTTGTA 6464 >seq83690 Length=433 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| | |||||| || || | ||| || || | Sbjct 219 GATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCG 160 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 159 AAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 100 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || |||| | || ||||| | || | || || ||||| || || || Sbjct 99 TTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 40 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 39 ACAAAGATCTGCATGCCT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495599728410720