Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq186 102 6e-17 seq83690 98.7 7e-16 seq18 87.8 1e-12 >seq186 Length=148488 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| || || | | | || || | ||| Sbjct 14057 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCAAGTTG 13998 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | |||||||| || ||||| ||||||||||| || || ||| || Sbjct 13997 TTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGAATCTT 13938 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| |||| || ||||| ||| || || | ||||| || || || || Sbjct 13937 GGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGTCTTTCCGGT 13878 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||| || ||||||||||| Sbjct 13877 CAGAGTTTTAACGAAAATTTGCAT 13854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | ||| || | |||||||| || || || || |||||||| || Sbjct 13854 TGCCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAG 13795 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| || ||||| || || | ||||||||||| || || || Sbjct 13794 AGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTG 13735 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||||||||| || ||| || || | || ||||| || || | Sbjct 13734 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAA 13675 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | |||||||| || || || || || || ||||| || |||||| Sbjct 13674 CTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCATA 13625 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| |||||||| || || || || ||||| || || | | | ||||| | ||| Sbjct 13601 ATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTACGACCATCTTCAAGTTG 13542 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || || | ||||||||||||||||| ||| || || ||||| || ||||| Sbjct 13541 CTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTATCCTGAATTTG 13482 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || || |||| |||||||| | ||| || || | ||||||||| || || || Sbjct 13481 GC-CTTCAC-GTTTCAATAGTATCAGAAGGTTCGACCTCAAGGGTAATGGTCTTTCCGGT 13424 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 13423 AAGGGTCTTGACAAAGATCTGCAT 13400 >seq83690 Length=433 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || ||||| |||||||| || ||| | | | ||||| ||||| Sbjct 229 ATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCCAATTG 170 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| | |||| |||||| ||||| || |||||||||||||| || || Sbjct 169 CTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTT 110 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || ||||||||| | ||| || || | ||| ||||| || || || Sbjct 109 GGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTTGCCAGT 50 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 49 GAGGGTCTTGACAAAGATCTGCAT 26 >seq18 Length=974545 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || | ||| ||||| || || || || |||||||| Sbjct 449675 TGCCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCG 449616 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | || || || || | ||||||||||| || || | Sbjct 449615 ACAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAG 449556 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||| |||||||| ||| ||||| ||| ||| |||| || ||||| ||| Sbjct 449555 GAATTCCCTCCTTGTCCTGAATCTTTGC-TTTCACATTTTCAATGGTATCTGAGGGTTCC 449497 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15183 || || ||||| |||||||| || || ||||| || ||||| || ||||| |||||| Sbjct 449496 ACCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCAT-TTTGAA 449441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356926696389410