Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 111 1e-19 seq186 87.8 2e-12 >seq18 Length=974545 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | || ||| || || ||||||||||| | Sbjct 449673 CCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGAC 449614 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||| || ||||||| ||||||||||| ||||| Sbjct 449613 AGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGA 449554 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| | | ||| || | | ||| | ||| || | || || Sbjct 449553 ATTCCCTCCTTGTCC-TGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCAC 449495 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || ||||| || ||||| |||||||| Sbjct 449494 CTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCAT 449447 >seq186 Length=148488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||||| || | ||| | |||||||| || ||||| ||||| || Sbjct 13171 TCCACCACGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGA 13112 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || || || || ||||| | |||| |||||||| || || || Sbjct 13111 AAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGG 13052 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| || || ||| | | || | || || | |||||| Sbjct 13051 AATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGAC 12992 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||||| ||| || ||||| |||||||| Sbjct 12991 CTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 12944 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || ||||| | || | || ||||| || || || ||||| || | || || | Sbjct 13840 CGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCA 13781 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| || || ||||||| ||||||||||| || || || || |||||| Sbjct 13780 TCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTG 13721 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | ||||| | ||| ||||||| || | Sbjct 13720 TCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATG 13661 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || ||||| |||||||| Sbjct 13660 GTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474865851894240