Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4578 156 4e-33 seq186 132 4e-26 seq83690 89.7 5e-13 >seq4578 Length=10518 Score = 156 bits (172), Expect = 4e-33 Identities = 490/745 (66%), Gaps = 27/745 (4%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||||| ||||| || |||||||||||| | |||||||| || ||||||||||| | |||| Sbjct 7603 CAAGTGGAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGCAACAGGAAGAGCAAT 7544 Query 123660 CAG-AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA--C 123716 ||| || | |||||| |||| ||||| ||| | ||| | |||||| | ||||| | Sbjct 7543 CAGCAGAATATTGGGA-CAATTCGCTGTAGCAATTTGTGCACAGAAATTGTAGAATATTC 7485 Query 123717 AGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTC 123776 | | | ||| | | || ||||| ||| |||| || ||| | ||| | ||| Sbjct 7484 GTCCAAG--GATGAGATTGCTGTGTGCAATCTGGCATCTATTGCTCTCAATATGTTCGTA 7427 Query 123777 GA-----AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTA 123830 | | | | || | |||| | | |||||| ||| | || || | ||| Sbjct 7426 AAGGCTGATAAGACG--TACGATTTTGAGAAACTCAAA-GCAGTGACGAAGATTGTTACG 7370 Query 123831 AAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCT 123890 |||||||||||| | ||||| | || | ||||| | || || ||||| Sbjct 7369 CGCAATTTGAACAAAGTCATCGACATCAACTACTATCCCGTACCAGAGGCCAAATTGTCC 7310 Query 123891 AATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATG 123950 ||| ||| ||||| || | || | || |||| || |||| || || || | || Sbjct 7309 AATATGAGGCACAGGCCAATTGGGATTGGGGTTCAGGGTCTGGCGGATGCTTTCATTTTG 7250 Query 123951 CTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACA 124010 |||| |||| || || ||||| ||||| ||| || ||| |||||| ||| || Sbjct 7249 ATGCGTCTGCCCTATGACAGCGAAGAAGCCAAGAAACTCAATCAGCAAATCTTCGAGACC 7190 Query 124011 ATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAA 124070 || || ||||| || |||||||| || |||||| | || | | | || | ||||| Sbjct 7189 ATCTACTACGGTGCCTTGGAGGCAAGTTGCGAATTGGCTGAGAAGCTTGGACCCTACGAG 7130 Query 124071 AGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG--AATGCTA 124128 | ||||| || | || | |||| ||||| |||||||||| |||||| || | | Sbjct 7129 ACATACGCAGGATGTCCAGTGAGCAAGGGTATCCTGCAGTACGAAATGTGGGGAAAG--A 7072 Query 124129 CACCGACAAATTTGTGGGACTGGAGCGTTTTAAAA-CAACGCATATCGACGCAC--GGTT 124185 ||| || |||||||| | ||| | ||||| ||| | || | | || || Sbjct 7071 AACCAACGGATTTGTGGAATTGGGATGAGTTAAAGGCAA---AAATTGCCCAACATGGCG 7015 Query 124186 TGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAA 124245 || | || ||| || |||| || ||||| || || | || || || ||| |||| | Sbjct 7014 TGAGGAATTCGTTGCTGGTTGCCCCAATGCCAACAGCTTCAACGGCCCAGATTCTAGGCA 6955 Query 124246 ACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG 124305 | || ||||||||||| || | ||| ||| ||||| || ||||| | |||| | Sbjct 6954 ATAATGAATCCTTCGAACCCTACACATCCAACATGTACAACCGCCGAGTACTCTCCGGTG 6895 Query 124306 ATTTTCAAGTGATAAATCATCATTT 124330 | || || || | || | |||||| Sbjct 6894 AATTCCAGGTAAGAATT--TCATTT 6872 Score = 145 bits (160), Expect = 7e-30 Identities = 489/749 (65%), Gaps = 23/749 (3%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||||| ||||| || |||||||||||| | |||||||| || ||||||||||| | ||| Sbjct 4276 CAAGTGGAAACTGGGACGCCGTACATGTTGTACAAAGATGCGTGCAACAGGAAGAGTAAT 4217 Query 123660 CAG-AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA--C 123716 ||| || | |||||| |||| ||||| ||| | ||| | |||||| | ||||| | Sbjct 4216 CAGCAGAATATTGGGA-CAATTCGCTGTAGCAATTTGTGCACAGAAATTGTAGAATATTC 4158 Query 123717 AGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTC 123776 | | | ||| | | || ||||| ||| |||| || ||| | ||| | ||| Sbjct 4157 GTCCAAG--GATGAGATTGCTGTGTGCAATCTGGCATCTATTGCTCTCAATATGTTCGTA 4100 Query 123777 GA-----AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTA 123830 | | | | || | | || | | |||||| ||| |||| || | ||| Sbjct 4099 AAGGCTGATAAGACG--TACGACTTTGAGAAACTCAAA-GCAGTAACGAAGATTGTTACG 4043 Query 123831 AAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCT 123890 |||||||||||| | ||||| | || | ||||| || || || ||||| Sbjct 4042 CGCAATTTGAACAAAGTCATCGACATCAACTACTATCCCGTGCCAGAGGCCAAATTGTCC 3983 Query 123891 AATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATG 123950 ||| ||| |||||| || | || | || |||| || | || || || || | || Sbjct 3982 AATATGAGACACAGGCCAATTGGGATTGGGGTTCAGGGTCTAGCGGATGCTTTCATTTTG 3923 Query 123951 CTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACA 124010 |||| |||| || || ||||| || || ||| || ||| |||||| ||| || Sbjct 3922 ATGCGTCTGCCCTATGATAGCGAAGAGGCCAAGAAACTCAATCAGCAAATCTTCGAGACC 3863 Query 124011 ATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAA 124070 || || || || || |||||||| || |||||| | || | | | || | ||||| Sbjct 3862 ATCTACTATGGTGCCTTGGAGGCCAGTTGCGAATTGGCTGAGAAGCTTGGACCCTACGAG 3803 Query 124071 AGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACA 124130 | ||||| || | || | |||| ||||| | |||||||| |||||| | | | Sbjct 3802 ACGTACGCAGGATGTCCAGTGAGCAAGGGTATCCTTCAGTACGAGATGTGGGACAAGAAA 3743 Query 124131 CCGACAAATTTGTGGGACTGGAGCGTTTTAAA-ACAACGCATATCGAC--GCACGGTTTG 124187 || || |||||||| | ||| | |||| ||| | || | | || ||| || Sbjct 3742 CCAACGGATTTGTGGAATTGGGATGAGCTAAAGGCAA---AAATTGCCCAACATGGTGTG 3686 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 | || ||| || |||| || ||||| || || | || || || ||| |||| || Sbjct 3685 AGGAATTCGTTGCTGGTTGCCCCAATGCCAACAGCTTCAACGGCCCAGATTCTAGGCAAT 3626 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 || ||||||||||| || | ||| ||| ||||| || ||||| | |||| || Sbjct 3625 AATGAATCCTTCGAACCCTACACATCCAACATGTACAACCGGCGAGTACTCTCCGGTGAA 3566 Query 124308 TTTCAAGTGATAAATCATCATTTGGTGGA 124336 || || || | || | |||||| |||| Sbjct 3565 TTCCAGGTAAGAATT--TCATTTTTTGGA 3539 >seq186 Length=148488 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || || || | || ||| ||||| || ||||||||||| ||||| || || || Sbjct 14081 TCCACCACGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGA 14022 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| || | |||||| || || | ||||| ||||||||||| || || Sbjct 14021 AAGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGG 13962 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||| ||||||||||| ||||| || ||||| ||| | || || || | || || Sbjct 13961 AATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAAC 13902 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||||| || || ||||| |||||||| || ||||||||||| Sbjct 13901 TTCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | || || | ||| || || || ||||| ||||| || || ||| Sbjct 13401 ATGCCTCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 13342 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || ||| | || | ||||||||||| || Sbjct 13341 GACAAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGG 13282 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || |||||||| || || |||| || | |||||| || | || Sbjct 13281 GGGATACCCTCCTTATCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCA 13222 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || ||||| || ||||| |||||||||||||| Sbjct 13221 ACTTCAAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCAT 13172 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| | ||||| || || || ||||| ||||| ||||| || || || Sbjct 13855 ATGCCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCA 13796 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| ||||| ||||| || || | ||||| || ||||| || || Sbjct 13795 GAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGT 13736 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || || || |||| || | || | ||||| || | ||| Sbjct 13735 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCAATAGTGTCAGAGGGCTC 13677 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||||| || || || || || || || ||||| || ||||| Sbjct 13676 AACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 >seq83690 Length=433 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||| ||||| || | ||||| || |||||||| || || || ||||| || Sbjct 408 ATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGAGGGATTCCTTCCTT 349 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || |||||||| |||| || | |||||| || | ||| ||||||||||||| Sbjct 348 GTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCAGAGGGCTCAACTTCGAGAGTAAT 289 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || || ||||| || ||||| Sbjct 288 GGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || ||||||||||| || || || || Sbjct 255 ATACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCC 196 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| ||||| ||| | |||| || |||||||| || Sbjct 195 GAAAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGA 136 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || || || |||| || | || | || ||||||| || Sbjct 135 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCAATAGTATCGGAAGGTTC 77 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || ||||| || || || || ||||| || ||||| Sbjct 76 GACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451399628826960